Yplu002493.1
Basic Information
- Insect
- Yponomeuta plumbellus
- Gene Symbol
- -
- Assembly
- GCA_947310845.1
- Location
- OX371219.1:8677286-8680249[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.004 0.37 12.2 1.1 1 23 4 27 4 27 0.95 2 23 0.00056 0.052 14.9 0.1 2 23 55 77 54 77 0.97 3 23 0.0049 0.45 11.9 0.4 1 23 99 124 99 124 0.97 4 23 0.00026 0.024 15.9 1.5 3 23 131 152 129 152 0.94 5 23 0.0012 0.11 13.8 2.5 1 23 157 180 157 180 0.96 6 23 0.001 0.094 14.0 0.2 2 23 186 208 185 208 0.96 7 23 0.022 2 9.8 1.9 2 20 213 231 212 233 0.94 8 23 6.7 6.2e+02 2.0 2.2 2 23 271 292 270 292 0.89 9 23 0.27 25 6.4 0.2 2 23 320 342 319 342 0.92 10 23 0.1 9.3 7.8 3.0 1 23 362 385 362 385 0.96 11 23 7.5e-05 0.0069 17.6 1.3 1 23 390 413 390 413 0.95 12 23 0.0035 0.33 12.3 0.8 1 23 418 441 418 441 0.97 13 23 0.00034 0.031 15.5 2.1 2 23 444 466 443 466 0.94 14 23 0.64 60 5.2 3.9 2 21 473 492 473 493 0.94 15 23 6.8 6.3e+02 2.0 4.2 1 23 545 568 545 568 0.93 16 23 0.56 52 5.4 0.0 2 23 596 618 595 618 0.90 17 23 0.00045 0.041 15.2 0.1 3 23 642 663 641 663 0.97 18 23 1.3e-05 0.0012 20.0 0.5 3 23 670 691 668 691 0.93 19 23 0.0032 0.3 12.5 0.8 3 23 697 717 696 718 0.88 20 23 0.0086 0.8 11.1 3.8 1 23 723 746 723 746 0.94 21 23 4.4e-05 0.0041 18.3 3.3 1 23 750 773 750 773 0.97 22 23 0.00013 0.012 16.8 0.4 2 23 780 801 779 801 0.96 23 23 2.3e-05 0.0021 19.2 0.7 1 23 807 829 807 829 0.97
Sequence Information
- Coding Sequence
- ATGAACAAGTTTCGTTGTTTCTACTGCCCGAAAGATTTCATCGAATCCGATGATATGAAAGAGCACACGTTTAAGGAACATCCTAAGTGCGATGTGAATCACAAAAGTATGAAGTTACGAGGACTCCCAAACGTCTTTATCAAAATAGACATTAATGATTTGAAATGTAATGTTTGCTCTGAACCATACAGTGACCTTGACGCTTTGATCGATCATCTTCAAACGAAGCACAAAGCCTCCTATGACAAGTCAGTTGATAGCAAAATACAAACATTCAAACTTGTTAAGGATAGTTATCCTTGCACTTATTGTCCCGACAAAGAACCCTTTCGATACTTCGGTCAGCTCTTAAAGCACATGAATAAGGAACATTCAAATAATAATCTAATCTGTCTCTTCTGTGGTATTTCGTTTAGATCTGATTCGCATTTGCGCACCCATATATCGCGCTACCACAGGCCTGAAGGCCACAAGTGCACTGATTGCGATTTGGAATTCACGACGAAGCTGCGACTTAAGAACCACAGAGCAAAAGCCCACGGAAAGAACATAGTGAAGTGCCCAGAGTGCCCCGAGAAATTCCCCACAACATACGACAAGCAAAAGCACTTGATAAAAGTCCACAACCTAGGTTCAAAGTGCAAATTTTGCGATCGCCTGTTTGTTAGAAATTCCTTTATGCAGAACCACATAAGCCATGAAGAGCCATCGAGCCTGTATGACCGTAAGACCGCACGGCGTAGGCGCAAAAACTTAGAGATTATATTCAACAACACTTCTATAATACCTTTCAAATGGCGTAGTCGCTTTCTCTGCTTCTATTGCGGGGACGGCCACACAAAGTACGATGAGCTGCGTAAGCACACGCTGTCGCACGGCAAATGTTCCATTCAGGACTACGCGCTGAAACTCATCAAGGGAAACTATAACGAAGTCAAATTCGACGTCTCCGAGATCTCCTGTGAGATCTGCAATGAACCGTTCAGCTGTTTAGACGAAATCATTAGTCACTTAAACGTAAAACATGGATTTGATTATGACTGTAACATTGAGACTTTGATTCAACAGTTCCGATTGACAGATCATAAATGCGTCTTTTGCAATGAGCAATTTGACTACTTCCGTTTTCTTATAACGCACATGAATAACGTTCATGGGAGTAACTCGTTTATTTGTGACGACTGTGGCATGGTTTGCAGTAAAAAGAGGGATTTGACTATGCACATTCGTGATAAACATCAGACTGGGGGCTACCCCTGCGAGGAATGCTCCGAAGTATTCGAAAGCTTCAACAGACTAAGAAATCATAAGAATAAAATGCACGTTTTAAAATGTCACTACTGCGCACTGACCTTTACTTCTAAAGGCCTTTTCAATAAACATTTGAAAGCGGAGCATCCGGATGATGGATCTAGAAAGTGCCCGTACTGCTCTTTAAAATGCCACTCGAAGTTCGGCCTTTCCCAGCACATGACCAAGTGCAAAATTAAGAAACTGAAGCACGACAGAGAACCTACTCACCACACTGAAAAGGAAGAGCCCAAGGCTAAGCAGGATGTGCTACAAATAAGGACCAATATACAGTCCGTTGTTAACATGACCACAGCCATACCGTTCAAGTTTTTCACGAAATTCCGTTGCTTCTTCTGCTATGAGAACTTTCAACACATTGACAAGTTGCACGAGCATACGTTAGCCGAACATCCTGTTTGCGATATCAAATGTACCTCAATGAAGAAGTGCAAGGGTGAGAGGGTGTGCGTTAAAGTAAATACTGTAGATTTGAAGTGCAAAATATGCGATATCGCAATTGATGACCTGGACAAGATGATAGACCACATAATCGATGAACACAAAGCCAATTACGACAAATCTTTAACCGGTTGTCTGCTCGCCTTCAAAATCTACAAACATCACGTTCTGTGCCCGGTCTGCAACGAAGAATTCCGATATATCAGCAATGTCTTAAAACACATGAATGTGGAACATACTAACAATAATATAATATGCTCGTTCTGCGGCAAAACCTTTAGGTCCACGGCCAATTTGCGGGCGCATCTCTCCTACAATCACAATAAAGACTCTACCTGTGTCCCTTGCGGCATTTCCTTCAAAAACTCCGCTTACCTAGCAAGGCACAAAGCCAAACACCACAACGCTAAAGAGCACAAGTGCCACCTTTGCGAAGAAACTTTCGCATCATCCTACAAGCGACAAAAGCATTTAATACAAGCTCACAACACCGGTCACAAGTGCACTTATTGCGACCGCATGTTCACACGAAACTCGTTCATGATAGACCATGTGCGAAGGATACACTACAAGGAGAAGACGAAGCCCTGCTCCGTCTGCGGCGAGAAGTTTTTCGACAACTACCTGCTTCGAATGCACATGGTCAAACACGATGGGGAGCGAAAGTTCCATTGCGACATCTGCGGGAAGTCATTCCTTAGGCGCAGCAATTTGGCTGGCCATATGGATGTGCACAAGAAGCAGGGGTTGGTCGTGGATAGGCCGCTTTGTGGTGTTGAGACCAGGGATTAG
- Protein Sequence
- MNKFRCFYCPKDFIESDDMKEHTFKEHPKCDVNHKSMKLRGLPNVFIKIDINDLKCNVCSEPYSDLDALIDHLQTKHKASYDKSVDSKIQTFKLVKDSYPCTYCPDKEPFRYFGQLLKHMNKEHSNNNLICLFCGISFRSDSHLRTHISRYHRPEGHKCTDCDLEFTTKLRLKNHRAKAHGKNIVKCPECPEKFPTTYDKQKHLIKVHNLGSKCKFCDRLFVRNSFMQNHISHEEPSSLYDRKTARRRRKNLEIIFNNTSIIPFKWRSRFLCFYCGDGHTKYDELRKHTLSHGKCSIQDYALKLIKGNYNEVKFDVSEISCEICNEPFSCLDEIISHLNVKHGFDYDCNIETLIQQFRLTDHKCVFCNEQFDYFRFLITHMNNVHGSNSFICDDCGMVCSKKRDLTMHIRDKHQTGGYPCEECSEVFESFNRLRNHKNKMHVLKCHYCALTFTSKGLFNKHLKAEHPDDGSRKCPYCSLKCHSKFGLSQHMTKCKIKKLKHDREPTHHTEKEEPKAKQDVLQIRTNIQSVVNMTTAIPFKFFTKFRCFFCYENFQHIDKLHEHTLAEHPVCDIKCTSMKKCKGERVCVKVNTVDLKCKICDIAIDDLDKMIDHIIDEHKANYDKSLTGCLLAFKIYKHHVLCPVCNEEFRYISNVLKHMNVEHTNNNIICSFCGKTFRSTANLRAHLSYNHNKDSTCVPCGISFKNSAYLARHKAKHHNAKEHKCHLCEETFASSYKRQKHLIQAHNTGHKCTYCDRMFTRNSFMIDHVRRIHYKEKTKPCSVCGEKFFDNYLLRMHMVKHDGERKFHCDICGKSFLRRSNLAGHMDVHKKQGLVVDRPLCGVETRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -