Basic Information

Insect: Yponomeuta plumbellus
Gene Symbol: -
Assembly: GCA_947310845.1
Location: OX371220.1:11385784-11387454[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 8e-07 7.4e-05 23.8 0.5 2 23 88 110 87 110 0.95

2 15 0.0018 0.17 13.3 2.5 2 23 118 140 117 140 0.92

3 15 0.00013 0.012 16.9 1.8 2 23 148 170 147 170 0.92

4 15 1.4e-07 1.3e-05 26.2 0.8 3 23 179 200 177 200 0.95

5 15 0.00019 0.018 16.3 0.3 2 23 208 230 207 230 0.95

6 15 0.00074 0.069 14.5 1.0 1 23 237 260 237 260 0.95

7 15 3.2e-05 0.003 18.8 1.2 2 23 268 290 267 290 0.96

8 15 8.5e-06 0.00079 20.6 0.4 2 23 306 328 305 328 0.94

9 15 0.00062 0.057 14.7 0.3 2 23 336 358 335 358 0.96

10 15 1.9e-05 0.0017 19.5 0.8 2 23 364 386 364 386 0.95

11 15 0.0025 0.24 12.8 4.7 3 23 395 416 393 416 0.96

12 15 0.00052 0.049 14.9 2.2 3 23 424 444 422 444 0.97

13 15 0.039 3.6 9.0 2.5 2 23 451 473 450 473 0.89

14 15 0.013 1.2 10.6 3.2 1 23 480 503 480 503 0.92

15 15 0.00029 0.027 15.7 0.3 2 21 510 529 509 530 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	8e-07	7.4e-05	23.8	0.5	2	23	88	110	87	110	0.95
2	15	0.0018	0.17	13.3	2.5	2	23	118	140	117	140	0.92
3	15	0.00013	0.012	16.9	1.8	2	23	148	170	147	170	0.92
4	15	1.4e-07	1.3e-05	26.2	0.8	3	23	179	200	177	200	0.95
5	15	0.00019	0.018	16.3	0.3	2	23	208	230	207	230	0.95
6	15	0.00074	0.069	14.5	1.0	1	23	237	260	237	260	0.95
7	15	3.2e-05	0.003	18.8	1.2	2	23	268	290	267	290	0.96
8	15	8.5e-06	0.00079	20.6	0.4	2	23	306	328	305	328	0.94
9	15	0.00062	0.057	14.7	0.3	2	23	336	358	335	358	0.96
10	15	1.9e-05	0.0017	19.5	0.8	2	23	364	386	364	386	0.95
11	15	0.0025	0.24	12.8	4.7	3	23	395	416	393	416	0.96
12	15	0.00052	0.049	14.9	2.2	3	23	424	444	422	444	0.97
13	15	0.039	3.6	9.0	2.5	2	23	451	473	450	473	0.89
14	15	0.013	1.2	10.6	3.2	1	23	480	503	480	503	0.92
15	15	0.00029	0.027	15.7	0.3	2	21	510	529	509	530	0.93

Sequence Information

Coding Sequence: ATGGAAGCAGTTTACATAAAACCGGAAGTTCTGGAAGTCAAAGTGGAAACTAGCCAGGAATCTTTTGACCCTTATCAAGATGTTGATCGAGCATTCCAAGCTGCAGAGGTGAAGATTGAGCCCCATATGCAGGCATCTGAATCTACAAGCTTCATGGACATTTTGGAAATTAATGAAAACCTAAACAATGACCATGCTTCACATGTAAACCTAAGTGAAATTGATGCAAAAGTTTATGGCAATGGCAAAAGGAACCGAATACCATGCCCTAAATGCGACCAGACATTCAAGAACAGAGCCAACTTAAAGCAACATCTGAAATATGTGCACGCTACAGAGAATGATATTGTTGAATGCAAACTATGCTTCAGAACATTCAAGTCCATATCCCATCTCCGCTCGCATAATTCATCTGTACACTTTGAGGAGGGAAAGGAGATTGTCTGCGAAACATGTGGCAAGCATTTTGTCAGCCGCAAAAAGCTGAACAATCACATATTCTACTCACACCCGGAACCAACAGACCAAGTGAACTGTGAAATATGCTCTAAGACTTTTAAAAGCAAATACAACTTGAAGGTCCACATGAGGCTCGTTCACCCTGCCACCGACAGCTCTGTCAAGTGCCCAAAGTGTGACAAAGTGTTCAAAGTAGAAATGCTCATGTTGAGGCATCTGAAGTGGAGTCATCCGACAGACGGAATGACCTACAAGTGCCAAATCTGCGGCAGAGTGTTGCCATCCATATCCTGCTACAAGAAACACCTGGAAAATGTTCACAAGAGCTTAGATGACTTGGTAACTTGTGATGTGTGCCACAAAGTATTTAAGTCTGGGACTAATCTGAAAATTCATGTGAAAAGAGTACATTCAGACGAACCATATGAGACTAAAGAGTACAAGATGGGTGACTTGCCATGCTCGGAATGCGACAAACGGTTTTCCTCCAACACTGCCCTCCAGTGGCATTATGAACGGAACCATTCGGAGAATAGGCGCAGCACAACTTGCAATTTATGCCAAAAAGAGCTGTCAGATTTTGGTGGCCTAAAACGACACATGGAGATGGTGCACTCTGTTGAGAAGGCTACATGCTTCATATGCCAAAAAGACTTCAAATCTCCCATGAATCTACAAAGGCATATAACGGTGACCCACGCTCCTCCGGAGGCAGCCCAGAACTGTGATATTTGTAAGAAAACCTTCAAATGCTCGATGCACTTGCGGATACACATAAACACAGTGCACCCAAAAGATGGCAAGACCAACTGTGACATCTGTAACAAAGAATTTGGCTCAAAGAAGTACATGCTGAAGCACAAAAAGACGCACATATTGACGCGAGAGTGTGCCTGCGGCATCTGCGGCAAGCTCTATAGAAGCCCAGAGGATGTCAAAAAGCATTGCAAAAGGGTTCACAATAAAACGCCCCTAGTTCACGAGTGTAATGTATGTCAAACCACTTTTGCGACAGAACAGTGTTTGAATGAGCATGTGACCCAATTTCACAGAGAAGGTGCTCAACTGAATTGCTTCAAGTGTGGTCGCGTATTCTCGCAAGAGGCCGATTTGCACTCGCACATTCTAAATTGCGGTAGCGACGAGGACGACGACGTACAGAAGGAGCCACTGGCTTTGATCAAAATTGAAATTGAGTCTGTAGACTCTTGA
Protein Sequence: MEAVYIKPEVLEVKVETSQESFDPYQDVDRAFQAAEVKIEPHMQASESTSFMDILEINENLNNDHASHVNLSEIDAKVYGNGKRNRIPCPKCDQTFKNRANLKQHLKYVHATENDIVECKLCFRTFKSISHLRSHNSSVHFEEGKEIVCETCGKHFVSRKKLNNHIFYSHPEPTDQVNCEICSKTFKSKYNLKVHMRLVHPATDSSVKCPKCDKVFKVEMLMLRHLKWSHPTDGMTYKCQICGRVLPSISCYKKHLENVHKSLDDLVTCDVCHKVFKSGTNLKIHVKRVHSDEPYETKEYKMGDLPCSECDKRFSSNTALQWHYERNHSENRRSTTCNLCQKELSDFGGLKRHMEMVHSVEKATCFICQKDFKSPMNLQRHITVTHAPPEAAQNCDICKKTFKCSMHLRIHINTVHPKDGKTNCDICNKEFGSKKYMLKHKKTHILTRECACGICGKLYRSPEDVKKHCKRVHNKTPLVHECNVCQTTFATEQCLNEHVTQFHREGAQLNCFKCGRVFSQEADLHSHILNCGSDEDDDVQKEPLALIKIEIESVDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01545924;
90% Identity: iTF_01545057;
80% Identity: iTF_01545924;