Yplu002542.1
Basic Information
- Insect
- Yponomeuta plumbellus
- Gene Symbol
- -
- Assembly
- GCA_947310845.1
- Location
- OX371219.1:9205643-9212899[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.033 3.1 9.3 0.1 3 23 13 33 11 33 0.93 2 28 0.024 2.2 9.7 1.7 2 23 56 77 55 77 0.97 3 28 0.0098 0.91 10.9 0.1 1 23 81 103 81 103 0.96 4 28 0.13 12 7.4 0.4 1 14 108 121 108 131 0.80 5 28 0.063 5.8 8.4 0.1 1 23 137 160 137 160 0.94 6 28 0.0041 0.38 12.1 3.6 1 23 167 190 167 190 0.97 7 28 4.4e-06 0.00041 21.5 4.2 1 23 197 219 197 219 0.96 8 28 1.7e-06 0.00016 22.7 2.7 1 23 225 247 225 247 0.98 9 28 1.2 1.1e+02 4.4 0.1 1 14 250 263 250 265 0.88 10 28 0.043 4 8.9 1.0 1 23 331 353 331 353 0.97 11 28 0.73 68 5.0 3.8 1 23 425 447 425 447 0.98 12 28 4.2e-05 0.0039 18.4 0.8 1 23 451 473 451 473 0.98 13 28 0.14 13 7.3 0.1 1 23 478 501 478 501 0.93 14 28 0.026 2.4 9.6 0.2 1 23 507 530 507 530 0.92 15 28 0.00067 0.063 14.6 3.5 1 23 537 560 537 560 0.97 16 28 8.5 7.8e+02 1.7 0.8 1 13 567 579 567 581 0.87 17 28 0.018 1.7 10.1 0.3 1 23 617 640 617 640 0.96 18 28 3.1 2.8e+02 3.1 0.8 2 23 663 685 662 685 0.94 19 28 1.4 1.3e+02 4.2 1.2 1 23 765 788 765 788 0.93 20 28 0.38 35 6.0 0.1 2 23 811 833 810 833 0.94 21 28 0.19 17 6.9 6.7 1 23 855 877 855 877 0.95 22 28 0.00013 0.012 16.9 0.4 1 23 881 903 881 903 0.98 23 28 0.00086 0.08 14.3 1.2 1 23 908 931 908 931 0.95 24 28 0.00031 0.029 15.6 3.0 1 23 937 960 937 960 0.97 25 28 0.18 17 6.9 1.8 1 23 967 990 967 990 0.94 26 28 0.00072 0.066 14.5 2.8 1 23 996 1018 996 1018 0.96 27 28 2.5e-06 0.00023 22.3 0.6 1 23 1024 1046 1024 1046 0.99 28 28 5.3e-07 4.9e-05 24.4 2.6 1 23 1052 1074 1052 1075 0.96
Sequence Information
- Coding Sequence
- ATGGGCCTTATTAACGTGGACGTTACGCAATCTATTTGCCGAGTATGCTCAGCGTCGTTCACCGATATAAGTCAAATGCAAAATCATGTCATCGATCACGGTTTTGAGTTTGATACAAACCAACCAGACGGTGTGCTGCCATTCTCGCTCAACAAAGAGTCGTGGAAATGCCTGATCTGTCACGAACTCTTCAATAACTTCTTCAAACTCTACGAACATATGAACGTACATTACCAGCATTTCATCTGCGCGACGTGCGGTAAAGGCTACATGTCAGCAACGCGGTTACGGAAACACGCGGAGATTCACATCAGTGGATCTTTTCCCTGCAATCAATGTGGACGTGCTTTTACTATGAGGGTAGCAAGGGACTACCATAAAGCGCACGCTCATTCCAAGGTGCCAAGATACGAATGCCCCGTGTGCAAAATCCGCTTCGAAGGTTACTATGCAAGAATGAACCATTTGAACGAAGAGCACAGAGAAAAAGAAGTCTCCTACAGCTGCCAACACTGCGATTTATGTTTTAAGACTAGCGGTAAAAGAGCTGCCCATGTTAAATCGGTCCACTTTCCGCCACAACATGGATGTAAATGTCCACACTGTGAATGGCAGTTCAAAACTCCGTATGAACTCAAGAGACATATGATAAAACATACGGGAGAGAAGGATTTCCATTGCTCGGTGTGCGGACAGTCATTTTCCAGAAGTAAAGCGTTAAAGATGCATATAAAGACTCACGAGGAGTTCAAGTGTCGATGGTGTGGGGTAGCTTTTAAGCTTAACAGTTCCGCACTCGCGGACGGAACGCCACGCGTTAGGAAGTTAAAAGAGAACGTTTGCGCTCGCACTCTGCAGCGACGTCGCAGGCAGGCCAACGTCTTGCCCGAGGAGTCCGAGAAACGCATTGAGAAAACCATGATGAGGCGGAATGCCATGATCATCATGGAGACCTCCACGGCTTGGGCTTTCCGCTGGTGGCGCAACGCGTTCTTTTGCTCCTACTGCGACGCCCGATACGTCGATATCAACCCTCTGTGCGAGCACGTCAAAACCCACCTACATGAACCCCCAACTAATAAAGTTTTCTCAAAAGTGAGGGAAAATAATATGCTCAAAATTGAAGTCACGGATTTGGCTTGTAGGCTGTGCAACGTCCGCATCGCTGGCATAGAAGTGTTGAAGCAGCATTTAATATCCGATCACGGCAAGACTTTTAATAGCGATTTCAGTGACGGCGTTTGTCCGTTCAAACTGGATGATCAAAACGATTTTACCTGCCAGATTTGCTTTAGCCATTTCATAAATTTCAATCGTATGAACGAACATATGAACTCGCACTACCAAAACTACATTTGCAATGTTTGTGGTAAGGCGTTCGTGTCTAAAACTCGCTTCAGAACGCACGTCCAATCTCACGAGGTCGGAGACTTCCCTTGCGGCGAATGCGATGAAGTCTTGAAAACCAGAGCTGCCCGAATGACCCATAGGGTCAAAGTGCACAAGAAAGGACTCCGGTACACATGCCCTAGGTGTCCGGAAATATTTACGTCTTACTACACACGAGCTATGCATCTTGTAAGCGGACATTCCCAGCAGAAACGAGAGTATGCTTGTGAGATTTGCAATAGGAGCTTTGAGACCAGTTGCAAGAGAGCTAAACACATGCGTAAGACTCACCGACCGCTAGACAGGATACACGAGTGTCAAAAATGCTCTTGGAGGTGTTCGAGACTTGGCGGGCAGGTCTCTTGGAAGCCGAGAAAGAAGTATCATGACGAAAGAGGCAATGCTGCCATTGTACTTGAGAGTTCGAACGCTTGTCCCTTTCGGTTTAAGCGAGGCACTTTCATCTGCGCCAGCTGCCCTCTATCCTTTGTCGAATTCAGCACTCTTAAAGAACATACAAATAAAGAACACGCCAAAATAGAAGCCCTACGTCTCGCTAAAACCGACGCCAAAATCAAAATCGATATCGCTGATCTGCGCTGCGAACTCTGTCGGAAAAACATGCAAAACTTGAATCAGTTCAAAGAGCATCTAGTGACCGAACATGATACAAAGCTTAACCCGAAGTTCAACGACGGTGTTGTTCCATTCATTTTAAAAGATAACGGACGAAAAGTCGCTGACGTACAGATAAAGACAGAGGTCTCCGATGAGGACCTAACGACGGGACGGGGTTTCGCTGAACGTGAACTAGAGAGTGACAGACGAGAGACGTTCAGGAGAAACATTAGCATTATTATAGAATCGTGCACGGCGTGCCCATTCAAATATCGCAGAGGAACCTACCTGTGCTTCTTCTGCAGCCAAACATTCCTGGAGCCAGACAAGTTACGGCAGCACACTCTATCGCAGCACTCCGACGTCAAAGAGCTGAGCAAACCGAGAAAATACGAACCCCTGAAGGTGGACTTCTCGAAAACCACCTGCAAACTCTGCGGCGACGCAATATCGGACTATAATACACTAAAAGCTCACTTGACAATAGCGCACGGGAAGATTATCGACAGCTCCTCCGGTGAGAGCGTGTTACCGTACAAGCTGGTGAAAGACGAACACTGCTGCCAGATCTGCGGCAAGCGATACGAAATGTTCCTTAGCTTGCACAAGCATATGAACGACCACTACGAGCATTATATCTGCGAGACGTGTGGAAAGGGATTCGCGACCTCGCAGAGGATGCTCAACCACGTCCGGACTCACGAGAGAGGGTCGTTCCCTTGCAAACATTGCGCGGAAACATTCCCCTCGTATTCTTCCCTGCATGCACACGTAGCCAAAGTTCACCGGTCGAACAACCGCTACAAATGTCCCATTTGTGAAGAGAAATTCTCCTCCTACAAGCATAGGCTGAAACACCTGAGAAATGTTCACGGAGAGAAGACGGCCCAGTTCCCTTGTCCGTCTTGTCCCAGAGTTTTTGACCTCTGCAGTCGGCGCACGTCGCATATTAGGTTTCAGCACTTGCAGGAACGGAATCATATATGTTCGACCTGTGGCATGAAGTTCTTCACCAAATATGAACTGCAAGAgcacacaatcaagcacggaggagaaaggatttaccaatgtgacgtatgcaagaaggcgtacgctcggttaaagacgttaagagaacatatgcggattcataacaacgataggcggtttgtctgcccagtctgtggacagtcattcatccagaattgtagtttgaaacaacatatgcgcgtgcaccaTCCGGCGCATCTGAAAAATGTATTCTAA
- Protein Sequence
- MGLINVDVTQSICRVCSASFTDISQMQNHVIDHGFEFDTNQPDGVLPFSLNKESWKCLICHELFNNFFKLYEHMNVHYQHFICATCGKGYMSATRLRKHAEIHISGSFPCNQCGRAFTMRVARDYHKAHAHSKVPRYECPVCKIRFEGYYARMNHLNEEHREKEVSYSCQHCDLCFKTSGKRAAHVKSVHFPPQHGCKCPHCEWQFKTPYELKRHMIKHTGEKDFHCSVCGQSFSRSKALKMHIKTHEEFKCRWCGVAFKLNSSALADGTPRVRKLKENVCARTLQRRRRQANVLPEESEKRIEKTMMRRNAMIIMETSTAWAFRWWRNAFFCSYCDARYVDINPLCEHVKTHLHEPPTNKVFSKVRENNMLKIEVTDLACRLCNVRIAGIEVLKQHLISDHGKTFNSDFSDGVCPFKLDDQNDFTCQICFSHFINFNRMNEHMNSHYQNYICNVCGKAFVSKTRFRTHVQSHEVGDFPCGECDEVLKTRAARMTHRVKVHKKGLRYTCPRCPEIFTSYYTRAMHLVSGHSQQKREYACEICNRSFETSCKRAKHMRKTHRPLDRIHECQKCSWRCSRLGGQVSWKPRKKYHDERGNAAIVLESSNACPFRFKRGTFICASCPLSFVEFSTLKEHTNKEHAKIEALRLAKTDAKIKIDIADLRCELCRKNMQNLNQFKEHLVTEHDTKLNPKFNDGVVPFILKDNGRKVADVQIKTEVSDEDLTTGRGFAERELESDRRETFRRNISIIIESCTACPFKYRRGTYLCFFCSQTFLEPDKLRQHTLSQHSDVKELSKPRKYEPLKVDFSKTTCKLCGDAISDYNTLKAHLTIAHGKIIDSSSGESVLPYKLVKDEHCCQICGKRYEMFLSLHKHMNDHYEHYICETCGKGFATSQRMLNHVRTHERGSFPCKHCAETFPSYSSLHAHVAKVHRSNNRYKCPICEEKFSSYKHRLKHLRNVHGEKTAQFPCPSCPRVFDLCSRRTSHIRFQHLQERNHICSTCGMKFFTKYELQEHTIKHGGERIYQCDVCKKAYARLKTLREHMRIHNNDRRFVCPVCGQSFIQNCSLKQHMRVHHPAHLKNVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -