Yplu025733.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Yponomeuta plumbellus
Gene Symbol
-
Assembly
GCA_947310845.1
Location
OX371202.1:15870065-15895252[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.00037 0.034 15.4 1.7 1 23 422 444 422 444 0.96
2 22 0.0052 0.48 11.8 0.6 1 20 450 469 450 472 0.94
3 22 3.8e-05 0.0035 18.5 3.5 1 23 492 514 492 514 0.98
4 22 0.00023 0.022 16.0 4.7 1 23 520 542 520 542 0.99
5 22 4.6e-05 0.0043 18.3 5.3 1 23 548 570 548 570 0.97
6 22 1e-05 0.00093 20.4 7.1 1 23 576 598 576 598 0.97
7 22 1.9e-05 0.0017 19.5 3.3 1 23 604 626 604 626 0.97
8 22 0.00013 0.012 16.9 6.7 1 23 632 654 632 654 0.97
9 22 0.00013 0.012 16.9 6.5 1 23 660 682 660 682 0.97
10 22 0.00029 0.027 15.7 0.4 1 17 688 704 688 705 0.95
11 22 0.00087 0.08 14.3 0.3 1 17 724 740 724 741 0.95
12 22 2.4e-06 0.00022 22.3 1.2 1 23 797 819 797 819 0.98
13 22 1.2e-05 0.0011 20.1 7.7 1 23 825 847 825 847 0.98
14 22 0.00017 0.016 16.5 6.5 1 23 853 875 853 875 0.97
15 22 3.8e-06 0.00035 21.7 6.6 1 23 881 903 881 903 0.98
16 22 6e-06 0.00056 21.0 5.3 1 23 909 931 909 931 0.97
17 22 2.1e-05 0.002 19.3 6.2 1 23 937 959 937 959 0.97
18 22 1.2e-06 0.00011 23.3 6.0 1 23 965 987 965 987 0.98
19 22 6.7e-05 0.0062 17.8 8.2 1 23 993 1015 993 1015 0.97
20 22 6.3e-06 0.00058 21.0 4.7 1 23 1021 1043 1021 1043 0.97
21 22 0.00042 0.039 15.3 1.8 1 23 1050 1072 1050 1072 0.97
22 22 0.033 3.1 9.3 6.3 1 23 1082 1104 1082 1104 0.99

Sequence Information

Coding Sequence
ATGAATCCGGAGCATCATTCTATCAATGCGGGTGGCGGCCAACCCCCAGGGAACTCTGAGTCGCAGAGCCAGCGCGCTCAGGCTTCTCAACAGCAGACTGCTACATTGACGCCGACTACGTCAGCCACGGATCTGAGAGTGAATTCGGCAGTGAATGTTGCTTTGTCAAGTGTCGCTAAATATTGGGTGTTCACAAATCTGTTTCCTGGACCTATACCTCAAGTATCTGTCTACGGACTCCCAGCTGGTGCTCGCATAGAGAATGGAAAACCAGTTCAGGATGCACTTGGTCAAACTCATGCCAGTATTCTCAATGGAGACCCAAATATTATCCTCGGCCATCATACTGGTGGGCAGTCTGTCACTGTCTCAGGGCCAGGGGGGCAACAAATACCAGTCACACAACTCATCGCCTCGCAGTCTGGACAGGGTCATGAAGCATTGGTCGCACAGCAGCAGGATTTGGGTCAGCAAGGCTCCAGCACCGGAGTAACAGTCAGCACGGGCTCCGGCCACCAGCAGGTACCCAATAACCGGGTGGAGTTTGTACAACACCATAACATAGATATGGTAAATCACATGGGACACCACTCTCAGCAACACATAATACAGCAGCAACTGATGACTGCAGCTCGTCCTGACCATGCCAATCAGCAGATTCAGTTGACAGTAAGTGAAGATGGCATAGTGACGGTGGTGGAGCCAGGCGGTGGAAAGTTGGTCGACAAGGAAGACCTTCACGAAGCTATCAAAATGCCCACGGACCACGCTTTGACAGTACACCAGCTGCAACAAATTGTCGGGCAGCAGGTGATAGACAGCGTGGTCCGCATAGAACAAGCGACAGGGGAACCAGCCAATATCTTAGTTACACACAACCCTGATGGGACCACATCCATAGAGGCAAGCGCCGCCGACCCGCTCGTGGTCAAGGACGAGAAAACCTCCAAGATGGACACCACGCCACAGTTCGCGATACCGGCTGAGATCAAGGACATTAAAGGCGCTATCGACTTGAAGAACGTAAGCGCCATGAACATGGAAGGCGCCGTCGTGAAGATATCGGCTGGAGCTGCCGAGCACGACATCCATGCCATGTACAAGGTCAACGTGGAGGACCTGTCGCAGCTACTAGCGTACCATGAAGTCTTCGGGAAACTCAACGCCGAGGGACAGACGCAGGCCAAGCCCAATATGGTGGAGATCGAGGTGGAAGCCGGTACCAGCACCACGATATCCGAATCGGACGCCTCGCCCGGCAGCCACGCGTGCGACCTCTGCGGCAAGATATTCCAGTTCCGCTACCAGCTCATCGTGCATAGACGCTACCACGGCGAACGAAAACCGTTTACGTGTCAAGTGTGCGGCTCTGCTTTCGCTAACCCCGTTGAACTTTCCAGGCACGGGAAGTGTCACGTTGCCGGGGTCCAAGAAGTAGAGAGGAACGCCAAGCGGCTAGCGCAAGACAAGCCCTATGCTTGCACGACGTGTCACAAGGCCTTCGCGCGGAAAGAACACCTTGACAACCACGTGCGGAGTCACACGGGAGAGACGCCTTACAGATGCCAGTTCTGCGCGAAGACGTTTACACGGAAGGAGCACATGGTGAATCACGTCCGTAAACACACGGGCGAGACGCCCCACCGCTGCGACATTTGCAAGAAGAGCTTCACGCGAAAGGAGCACTTTATGAACCATGTCATGTGGCATACCGGTGAAACGCCGCACCATTGCCAAATTTGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGCGAACCACATGCGCTCGCATACAAACGACTCGCCTTTCCAATGCGAATTGTGCAGCAAATCGTTTACGAGGAAGGAACACTTCAGCAATCACATACTGTGGCACACTGGCGAGACGCCCCACCGTTGTGATTTCTGCTCTAAAACGTTCACGCGAAAGGAGCACCTACTCAACCACGTGCGCCAACACACAGGGGAGTCGCCGCATCGCTGCAACTTCTGCTCGAAGTCGTTCACCCGCCGCGAGCACCTCGTCAATCACGTGCGACAACACACGGGCGAGACGCCCTTCCAGTGCGGATACTGTCCCAAGGCGTTTACCAGGAAGGACCATCTTGAGTTAGCTGCAACTCCGAATCCGAGTCGTTCCGCGAGCACCTCGTCAATAATGTCGCCCTTCCAGTGCGGATACTGTCCAAAGGCGTTTGCCACGAAGGACCATCTCGAATCCGTGTCGTTCCGCGAGCACCTCGTCAATAATGTCGCCCTTCCAGTGCGGATACTGTCCCAAGGCGTTTACCAGAAAGGACCATCTCGAGTTGGCTGCAACTCCGAATCCGAGTTGTTCCGCGAGCACCTTGTCAATAATGTGCGACAACACACGCGCGAGACTCCCTTCCAGTGCGGATACTGTCCAAAGGAGTTTGCCACCAAGGATCATCTCGTGAACCATGTCCGGCAACACACGGGCGAATCTCCGCACAAGTGTTCCTATTGCACGAAATCGTTCACCCGCAAGGAGCACCTAACGAATCACGTACGACAACACACGGGCGAGTCACCGCACCGGTGCTCCTTCTGCGCCAAGTCCTTCACACGGAAAGAGCACCTCAACAATCATGTTCGCCAACACACGGGCGAGACGCCGCACAAGTGCACGTACTGCACGAAAGCGTTCAGCCGGAAGGAGCATCTGAACAACCACATCCGCCAGCACACCGGTGACCTGCCTCATGTCTGCACAATCTGCAGCAAGACCTTCAGCCGGAAGGAGCATCTCACCAACCATGTGCGGCAACACACCGGCGAGACACCGTTCAAGTGTACCTACTGCGCCAAGTCATTTTCCCGTAAGGAGCATCTGACGAATCATATACATCTGCACACCGGAGAGACGCCACACAAGTGCCCCTTCTGTACCAAAACGTTCTCCCGAAAGGAGCACCTCACCAATCACATCAGGATACACACAGGGGAATCGCCGCACCGATGCGAGTTCTGTCAGAAGACGTTCACACGCAAGGAACACTTAAACAACCATCAGAAACAACACACGGGCGACACGCCGCACATGTGCAAAGTCTGCTCCAAGCCTTTCACTAGAAAGGAGCATCTCGTCTCGCATATGAGATCGCACAGTTGCGGCGAGCGGCCATTCAGTTGCGAGCACTGCGGCAAGTCGTTCCCACTGAAGGGCAACTTGATGTTCCACGAGCGATCGCACTACAAAACCGGCGCAGGCGCACGCCCCTTCCGATGCGAAGTCTGCTCAAAGGATTTCATGTGTAAAGGACACCTGAACACCCACCGTCGGACTCACGCTGACGGCGCGACTAGCGGCGCGGCGGCGGCGGCGCCCGACACCGAGGAATGTACGAGCGCCTGCGCCAAGCTGGAGCCCGGCGTCGAGGACGCAACGCCCGCGGCTCAGCCGCAGCGCTTGGAGAGGAAGATTGATAGACACACGTCCGACACCGAGGAATGTACGAGCGCCTGCGCCAAGCTGGAGCCCGGCGTCGAGGACGCAACGCCCGCGGCTCAGCCGCAGCGCTTGGAGAGGAAGATTGATAGACACACGTCCGACACCGAGGAATGTACGAGCGCCTGCGCCAAGCTGGAGCCCGGCGTCGAGGACGCAACGCCCGCGGCTCAGCCGCAGCGCTTGGAGAGGAAGATTGATAGAAATTCAACGGAAAACAGGACCAGTGAAGCGACGGTGGCGCAGAATGTGCAAAACAGCGCGACTGTGATGCAAATAACCAGCCAGGTCCGCGCTGGAGTGGCGACAAGCGGCGCCGACGCGGCGACCAACGTGTCGACGTATACGCACACTCCAGCGATCGCGCACCACCCCGTCACGGTTAACTATTAG
Protein Sequence
MNPEHHSINAGGGQPPGNSESQSQRAQASQQQTATLTPTTSATDLRVNSAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPAGARIENGKPVQDALGQTHASILNGDPNIILGHHTGGQSVTVSGPGGQQIPVTQLIASQSGQGHEALVAQQQDLGQQGSSTGVTVSTGSGHQQVPNNRVEFVQHHNIDMVNHMGHHSQQHIIQQQLMTAARPDHANQQIQLTVSEDGIVTVVEPGGGKLVDKEDLHEAIKMPTDHALTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAADPLVVKDEKTSKMDTTPQFAIPAEIKDIKGAIDLKNVSAMNMEGAVVKISAGAAEHDIHAMYKVNVEDLSQLLAYHEVFGKLNAEGQTQAKPNMVEIEVEAGTSTTISESDASPGSHACDLCGKIFQFRYQLIVHRRYHGERKPFTCQVCGSAFANPVELSRHGKCHVAGVQEVERNAKRLAQDKPYACTTCHKAFARKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLANHMRSHTNDSPFQCELCSKSFTRKEHFSNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLELAATPNPSRSASTSSIMSPFQCGYCPKAFATKDHLESVSFREHLVNNVALPVRILSQGVYQKGPSRVGCNSESELFREHLVNNVRQHTRETPFQCGYCPKEFATKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCSFCAKSFTRKEHLNNHVRQHTGETPHKCTYCTKAFSRKEHLNNHIRQHTGDLPHVCTICSKTFSRKEHLTNHVRQHTGETPFKCTYCAKSFSRKEHLTNHIHLHTGETPHKCPFCTKTFSRKEHLTNHIRIHTGESPHRCEFCQKTFTRKEHLNNHQKQHTGDTPHMCKVCSKPFTRKEHLVSHMRSHSCGERPFSCEHCGKSFPLKGNLMFHERSHYKTGAGARPFRCEVCSKDFMCKGHLNTHRRTHADGATSGAAAAAPDTEECTSACAKLEPGVEDATPAAQPQRLERKIDRHTSDTEECTSACAKLEPGVEDATPAAQPQRLERKIDRHTSDTEECTSACAKLEPGVEDATPAAQPQRLERKIDRNSTENRTSEATVAQNVQNSATVMQITSQVRAGVATSGADAATNVSTYTHTPAIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01546831;
90% Identity
-
80% Identity
-