Basic Information

Insect: Yponomeuta padella
Gene Symbol: -
Assembly: GCA_947311075.1
Location: OX371257.1:4118880-4136823[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.061 4.1 8.5 0.4 1 23 348 370 348 370 0.98

2 10 0.0015 0.1 13.6 2.8 1 23 377 399 377 399 0.96

3 10 0.14 9.2 7.4 2.1 1 23 430 453 430 453 0.94

4 10 0.0015 0.1 13.6 1.7 2 23 458 480 457 480 0.94

5 10 0.82 55 5.0 0.1 3 21 495 513 494 518 0.91

6 10 0.37 25 6.1 0.2 2 23 567 589 566 589 0.95

7 10 0.0071 0.48 11.5 1.7 2 23 605 626 604 626 0.95

8 10 0.0016 0.11 13.5 1.3 1 23 632 654 632 654 0.96

9 10 5.3e-05 0.0036 18.2 2.4 1 23 661 683 661 683 0.96

10 10 2.6e-05 0.0017 19.1 1.7 1 23 689 712 689 712 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.061	4.1	8.5	0.4	1	23	348	370	348	370	0.98
2	10	0.0015	0.1	13.6	2.8	1	23	377	399	377	399	0.96
3	10	0.14	9.2	7.4	2.1	1	23	430	453	430	453	0.94
4	10	0.0015	0.1	13.6	1.7	2	23	458	480	457	480	0.94
5	10	0.82	55	5.0	0.1	3	21	495	513	494	518	0.91
6	10	0.37	25	6.1	0.2	2	23	567	589	566	589	0.95
7	10	0.0071	0.48	11.5	1.7	2	23	605	626	604	626	0.95
8	10	0.0016	0.11	13.5	1.3	1	23	632	654	632	654	0.96
9	10	5.3e-05	0.0036	18.2	2.4	1	23	661	683	661	683	0.96
10	10	2.6e-05	0.0017	19.1	1.7	1	23	689	712	689	712	0.94

Sequence Information

Coding Sequence: ATGAAATGTTGCGTGGACTCATGCAAAAACAATACCAAGCGTGTGTCTAAGTCTCAAGGGATTAGTTTTTTTAAGTTTCCCCAGGACCCCGTGATCAGAGCGCAATGGTTGAGGGCTCTCGGTACCCCCAGCGGGGTTAGAGGCAAAGCCCTAGTCTGCATAGATCACTTCTACAATGAGGACTTGTGTTTGGGAGAGAATGCTGAAGTTATGGTCAGGGAAGGTGCTCTTCCGAAGAATTTCGAGGTTTGCAAAATTTGCCTCACCACAGCGATCGGTGGCAGGTTATACAATCTTCTCACAGAAAACTTGTCCCAGGCATATGAATCGATGACCGGCATATCTGCGGGCGTGCCAGCCGGTCTGCCGGCGCGACTTTGTGCCGGCTGCGCGTGGCGGCTCCTGAGCCACGCGCGCTTTAGACAAGCTGCCATCAGTGCACAGACTCGGCTGGTCGGGGTTCTGGGTTCCAGCGATCAGGTAACACCCCGACATATAGAAGAAATAGGCCGGCTCGAAAACACCCACCTGACACGACTATCTTACAAGCATCACGAGCCTCAGTATTACTACCCGAGCCAAGAAAATGACGATATAAACCCTCTATTATGTGATAGTACCAACACTTTGTCTTTGCACGAAGTCAACATCAATTTAGAGACGAGAGAAGACTCTAAAGACTTCTACCACGAGAACGAAACGCAGGACTCCATCAAAAGCGAAGCCAATTCCCCGAGGAACAGTGATGAAAATCCCATAGCAGACGCCAATGAAGATAACACCTTTTCTAGTGACGACGACCGGCCAATACTCCCGCTGACAGTCGACAAAAAGGCCGAAAACGCAGAAAAAAGTTCTGAAAAACGAACCGCAAAGAAAAAGAAGAACGCTTTAAAAAAAGAACCTAAAACCGACAGGCGAAAGAAGGTCTTAGGCGACGATTTAGACGACAAAATATTTGCGTCGTCACACCTCGACGCCGAGGAGCAAATATTGGAGTTCCAGAAGCGAATGCTGAGTTCCAATTACAAAAACGCGGTGTACAAATGCGGATCGTGCTACAAGGGGTTCTTGGACGAGGACGCTTATAACAATCATATGGTGCGGCATACGGATCAATGCGGTGCGCACGAGTGCGGAATTTGCCGTATCCGCTTCAAGCAAGCGCACTCTTTGCGCAACCACGCCACATCGCACGCGCAGAAGTTCACCTGCAAGTGCTGCCCCTACGTCACCTTCAGGAAACAAACAGCCAAACTGCACGAAGAATGGCACAACGGGACGAGGTACCAGTGTCCGCATTGTCAAGAAGAGTTTCTTAAATTCACCACCTACATGGGGCACATACGGATCAAGCACCCTTCGGACTGCGTGTGCCAACTGTGCGGCTACTCCTTTGTCAGCGAGAAGGGACTGCGGCTGCACACGAAGCTAAAACACCGGCTGGACGAAGAGTCTGTCATACCGGCGGACGGCCCGTACTGCGAGCGCTGCGGGGTTCGATTCCTGTCGGGGGAGGCCTTGAGGCGACACTTGCAAGTGTCCGCCCGACACCACGAGGGTGGCGAAAGCGAGGCAAAGCAAGCGCCACAAAAGAAGGCACGCAAACCCAGAGTGAGCAAAGACTGCGCCACAGAGACTACGGACTCGGGGAAGAAGAGACGACGATCCGTCGCTGTGAAGCCGGGTGGGCCGATACCGTGCGAGCAATGCAACATTCAGTTGGAGGACTCCCGCGCGTATTACAAACACTTCAGGCGCGCGCACCCCGACAAGAATCGAACCAACTACCCCTCCATGAAGTCGCCGTGTATGTGCGAGCGGTGCGGCCGGATGTTCCAGACGCTCGCCCTCCTGGTGGACCACCTGCACGTCCACTCGGCCGAGAAGCGCTTCCGCTGCGCGCTCTGCGGCAAGCGCTTCCAGCAGAAGCAGCGGCTAGTTGCGCACGCGCACGTCCACAGCGCGCGCAGGCCGGCTTACGTCTGCGCCGTCTGCGGAAAGCGGTTCAGCACGCATAGCAACAGGCAGAGGCATGCGTTTTCGCACACCGGCCTGAAGCCCTTCAAATGCGAGATGTGTGGCAAAAGTTTCAAGCACGCGAGCGAAAAGCGCGCGCACGTCAGCTACGTGCATTTGAAAAAACCGTGGCCTAAGCGAGCGCGGCACAAGCGGACACGGGAAGTTTACGAGGCGCCGGATGCCGCTAGGGACCCACCACAGAGGGAGATGGAAATAAACGAGCCACTATGGACAGCCTGCGCCGAGCCCAAACTGGACCATCCTCTCCCTGACAAACCCATGTACTACAACTTGAAGATATAA
Protein Sequence: MKCCVDSCKNNTKRVSKSQGISFFKFPQDPVIRAQWLRALGTPSGVRGKALVCIDHFYNEDLCLGENAEVMVREGALPKNFEVCKICLTTAIGGRLYNLLTENLSQAYESMTGISAGVPAGLPARLCAGCAWRLLSHARFRQAAISAQTRLVGVLGSSDQVTPRHIEEIGRLENTHLTRLSYKHHEPQYYYPSQENDDINPLLCDSTNTLSLHEVNINLETREDSKDFYHENETQDSIKSEANSPRNSDENPIADANEDNTFSSDDDRPILPLTVDKKAENAEKSSEKRTAKKKKNALKKEPKTDRRKKVLGDDLDDKIFASSHLDAEEQILEFQKRMLSSNYKNAVYKCGSCYKGFLDEDAYNNHMVRHTDQCGAHECGICRIRFKQAHSLRNHATSHAQKFTCKCCPYVTFRKQTAKLHEEWHNGTRYQCPHCQEEFLKFTTYMGHIRIKHPSDCVCQLCGYSFVSEKGLRLHTKLKHRLDEESVIPADGPYCERCGVRFLSGEALRRHLQVSARHHEGGESEAKQAPQKKARKPRVSKDCATETTDSGKKRRRSVAVKPGGPIPCEQCNIQLEDSRAYYKHFRRAHPDKNRTNYPSMKSPCMCERCGRMFQTLALLVDHLHVHSAEKRFRCALCGKRFQQKQRLVAHAHVHSARRPAYVCAVCGKRFSTHSNRQRHAFSHTGLKPFKCEMCGKSFKHASEKRAHVSYVHLKKPWPKRARHKRTREVYEAPDAARDPPQREMEINEPLWTACAEPKLDHPLPDKPMYYNLKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01546728;
90% Identity: iTF_01546728;
80% Identity: iTF_01544959;