Ypad014515.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Yponomeuta padella
Gene Symbol
-
Assembly
GCA_947311075.1
Location
OX371230.1:5747694-5757131[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.2e-05 0.00083 20.1 0.6 1 23 55 77 55 77 0.97
2 16 0.0039 0.26 12.3 1.8 1 23 83 106 83 106 0.95
3 16 0.0064 0.43 11.6 5.3 1 23 119 141 119 141 0.98
4 16 0.029 2 9.5 1.0 1 23 149 171 149 171 0.98
5 16 0.27 18 6.5 3.1 1 23 183 206 183 206 0.97
6 16 0.053 3.6 8.7 3.2 1 23 336 359 336 359 0.97
7 16 0.044 2.9 9.0 1.0 1 21 366 386 366 387 0.94
8 16 0.00035 0.024 15.6 3.6 1 23 419 441 419 441 0.98
9 16 0.0011 0.076 14.0 0.7 1 23 446 468 446 468 0.97
10 16 0.029 1.9 9.6 1.1 1 23 474 497 474 497 0.94
11 16 0.057 3.9 8.6 0.6 1 23 507 530 507 530 0.95
12 16 0.0024 0.16 12.9 0.4 1 23 627 649 627 649 0.98
13 16 0.19 12 7.0 1.5 1 23 668 691 668 691 0.93
14 16 0.029 2 9.5 0.6 1 23 712 735 712 735 0.95
15 16 2.5 1.7e+02 3.4 2.5 1 23 750 773 750 773 0.86
16 16 0.043 2.9 9.0 1.9 1 23 787 810 787 810 0.96

Sequence Information

Coding Sequence
ATGTCGCGCAAACGTGACAAACAAATTCGCGCCTGGCCATGCTACGCCAGGTCGCAGCTAGCAGACTCTGACGACGAGCCGCTAGCTTCCCTCCCCTTCCGCGACGACTCGGACGAAGAGCCGAAGGCCAAACCGAAGAGGAAACGCCTCCTTAACAAGACCTTCGCCTGCGAAGTCTGCCCGTATTCCACAAAGTACAAAGACGCTCTCAAGTCCCACATGCGAAAGCACACCGAAGGTAAACCGTACAAGTGCACCCTCTGCGATTACTCCAGCAAGTATCCCACCGCGATGCGCAGGCATAAGATGCTAAAACACCCGGAGAGCTTCTCGTCCGCTTCCAAACCGAAGGAGTACGTTTGCCACGAGTGCAGTTACAGAACTTACTACAAAGCCAACCTGTTCCAGCACTTCAGGAAACACAATCCGGACAAGGCTAAACAGTTCAAGTGCGAGTCCTGTCCGTTCGCTACGGCGTACCAGACGGCCTTTTACAGGCATCGTAAGATACACAAGCGTAAGTTAGCGAACGGTCAGATCATCACGCACCAGTGTGACATGTGTCCGTATTCAACGCAGCACGAGGGCCGGTTCTCTTGGCACATGCTGAAAACTCACAACAAAAGGGGCGTTTTCGAGAAGGGAATCAAGTGCGATTACTGTGACTTCGAGACGTACAAGAAACTGAAGTTCCGGCTCACGGCGCACCTTCAGAGGAGCAAGCAAATGATGCCGATGAAGTGTCTACACTGCGATTTCGAGACCTACTACAAATGTCAGGTGAGATTCCACAGAAAAACTCACTACCCGGAGTTGCAGAGTATAACTCGGGTGCCCAAAACTGAGGATGCCAGTCAGAATGCTAACCCGCCTGAGAACGTGGAAGCTCCAGCGCCGAGCCTCAATCTCATACTAGGGCATTGCAAAGAGGACAATTATGAAGTAGACTCCGCTATAGCGTGGAAGAAGATTCCCGTCTTAGAGAACAGAAGTCTTAACAAACCGTTCTCCTGTTACAAGTGCTCGTACGCCTCACGCTTCAAGTCGTCAGTCCAACGGCATTACCAGCGTCTCCACGGCAATAAAGCCAAACCATACCGCTGCAGCCATTGTGACTTTGGCACTTCAACAAAAGACTCCATCGCGCTGCACACTAAGCGGAGCAAACAGAATAATGCAATGGAATGCGAGTGCGGTCAATTCGCAACATTCTACAAATGCGAGTTTGTCGTTCACCAGAAACTGCACAACCCTTACCGTTGTAGCAAATGCACTTACTCTTCCAAGTCCAAATACGATTTGGAGCGTCATTACACGATGCACAGTAACAAAGGGTACAAGTGTGAACACTGCGATTACGTCGCGGTGCGGCGCGACACTTTATCGACTCACGCTGTGACCCATACCGGCATAAAGCCTTACCAGTGCCATCTATGCCCTTACGGCACTATGAGGCTGACGTTCTTAGAGAAACACATTATTGATAAACACGACGGCGATGCCTCAAAGACTAAACCTTTCCAATGCCATTTGTGTCCGTACGGATCGTTCAGACAAGGCGTTTTGGACAGGCATATCCTTCAAGAGCACGCGGAGACGAACGATGTGGCCGTGGATGATTGCAACGATAATGTTCAGAATGACGATGCTCAGAATAACGACACGCACAATGACAGTGCACAGAATGACGACACGCATACCGACGACGACTCCATCGGTAACGTCGTTGACACACAAACCCCGACCCTAAACACAAGTTACTACGATCTATCGACGCGCAATAATATCACGATAGAAAGCCCAGCCGTTGCCAACGCGAACGATAGTCAGTATCCGACCCCGACGGAGAAACTAACGCAAGAAAAAGGCGTGAAACCTTTCCAGTGTACCGTGTGCCCTTACAGCGCTTTCAGTCCGAAAGTCTTGAAGAAACATATGACCATACACACGGATGTTCGCGTGGATAGCATAGACGAAGCCGCCGACGCGACAGTCAAGCCATTCCAATGCCATTTGTGTCCTTACAGCTCATTCCGCCCCAACATTCTGAAGAACCATCTGATTCTAAAACACTCCATAACACCCCCAGCGGGATTCGTCGACGAGTACAACACTAAAACAACCGAGAAGACCTACCAGTGTCACATTTGCCCGTACAGTTCCATGAGCATCAACGTCCTGAACAAACACTTGGCGATAAAACACGAGACCACGGCAGCAACCGCTCTTGAGAATACAGTCAAGACATTCCAGTGTCACCACTGCCCTTTCAACTCCTTGAACCCCAACGTTTTGAAAAAGCACGTGATACAGTCACACTCGGGGAGGTCGGAGGTCCAAACCGAAGGCGCCAAGCCATTCCGATGCCAGTTCTGTCCGTACAGCTCCTTCAGTCCGAAGGTTTTGAGGAAGCATCTGATGCAGAAGCACTCTGGCCTTCCGAGATCCGCGTTCGAAACTTACAGTGACAATTCGGTGGAAGTCGTGAGCGTTGCTTCCGAAAATGACTGA
Protein Sequence
MSRKRDKQIRAWPCYARSQLADSDDEPLASLPFRDDSDEEPKAKPKRKRLLNKTFACEVCPYSTKYKDALKSHMRKHTEGKPYKCTLCDYSSKYPTAMRRHKMLKHPESFSSASKPKEYVCHECSYRTYYKANLFQHFRKHNPDKAKQFKCESCPFATAYQTAFYRHRKIHKRKLANGQIITHQCDMCPYSTQHEGRFSWHMLKTHNKRGVFEKGIKCDYCDFETYKKLKFRLTAHLQRSKQMMPMKCLHCDFETYYKCQVRFHRKTHYPELQSITRVPKTEDASQNANPPENVEAPAPSLNLILGHCKEDNYEVDSAIAWKKIPVLENRSLNKPFSCYKCSYASRFKSSVQRHYQRLHGNKAKPYRCSHCDFGTSTKDSIALHTKRSKQNNAMECECGQFATFYKCEFVVHQKLHNPYRCSKCTYSSKSKYDLERHYTMHSNKGYKCEHCDYVAVRRDTLSTHAVTHTGIKPYQCHLCPYGTMRLTFLEKHIIDKHDGDASKTKPFQCHLCPYGSFRQGVLDRHILQEHAETNDVAVDDCNDNVQNDDAQNNDTHNDSAQNDDTHTDDDSIGNVVDTQTPTLNTSYYDLSTRNNITIESPAVANANDSQYPTPTEKLTQEKGVKPFQCTVCPYSAFSPKVLKKHMTIHTDVRVDSIDEAADATVKPFQCHLCPYSSFRPNILKNHLILKHSITPPAGFVDEYNTKTTEKTYQCHICPYSSMSINVLNKHLAIKHETTAATALENTVKTFQCHHCPFNSLNPNVLKKHVIQSHSGRSEVQTEGAKPFRCQFCPYSSFSPKVLRKHLMQKHSGLPRSAFETYSDNSVEVVSVASEND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-