Basic Information

Insect: Yponomeuta padella
Gene Symbol: -
Assembly: GCA_947311075.1
Location: OX371254.1:3401770-3420057[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.001 0.069 14.1 3.1 2 23 257 279 256 279 0.97

2 10 0.24 16 6.7 2.0 1 23 284 306 284 306 0.96

3 10 0.0002 0.013 16.4 4.8 1 23 310 332 310 332 0.98

4 10 0.01 0.68 11.0 0.8 1 23 345 368 345 368 0.95

5 10 6e-05 0.004 18.0 0.8 1 23 372 394 372 394 0.99

6 10 0.011 0.71 10.9 0.8 1 23 405 428 405 428 0.94

7 10 0.0027 0.18 12.8 0.0 3 23 436 458 434 458 0.89

8 10 1.3e-05 0.00084 20.1 0.1 1 23 462 484 462 484 0.98

9 10 0.00055 0.037 15.0 0.2 1 23 490 513 490 513 0.96

10 10 0.29 19 6.4 0.6 2 23 519 541 519 541 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.001	0.069	14.1	3.1	2	23	257	279	256	279	0.97
2	10	0.24	16	6.7	2.0	1	23	284	306	284	306	0.96
3	10	0.0002	0.013	16.4	4.8	1	23	310	332	310	332	0.98
4	10	0.01	0.68	11.0	0.8	1	23	345	368	345	368	0.95
5	10	6e-05	0.004	18.0	0.8	1	23	372	394	372	394	0.99
6	10	0.011	0.71	10.9	0.8	1	23	405	428	405	428	0.94
7	10	0.0027	0.18	12.8	0.0	3	23	436	458	434	458	0.89
8	10	1.3e-05	0.00084	20.1	0.1	1	23	462	484	462	484	0.98
9	10	0.00055	0.037	15.0	0.2	1	23	490	513	490	513	0.96
10	10	0.29	19	6.4	0.6	2	23	519	541	519	541	0.97

Sequence Information

Coding Sequence: ATGGTGAGCGTGGATATGAAAAATGTAGTGTCACATCTGGTGAACGGAACTCTGGGAGAGAATTTGTGTCGTGTATGCTTATCACCGCTGGACAGGACCTGCGAGAGTATTTTTACTGAGATCTGCAAAGACGATAAAGCCTACTCCATCGCTGATGTCTTGGAAAATGTTGCCCAGATAAAGCTGAACCGTGAGGATAACTACTGTGTTTGCTCCACCTGCTTTTGCATAGCTTCAATAGCATACAAGTTCTATCACACTTGTCAACGTACAGAGGCAATCCTCAGATTCTATGTATCAGAACTAGAGAGCAATGTAACACTATTGGAACAACCTATCGAAAATCCTGGAGAGTCCTATTGTATCTCTTTGCCATTGATCAAGACGGTAGACACATTTGACTATGATGTAGAGGGTAAAGCTCCACAAAGCCCAGCTAAAGAATTAACGTTGTGTAGACATTCAGACAAATTAGATGTTCTTGTACGTAAAGTAAAAGATGAACTGTTAATTTCTGGTGCAGAAGATGGACAAGAAGATGATGAGGAGGAACTGGAGGAAGATGTATTAATGGTCTTAGATGAGAGCTTTAAAAGAAAGTATTTCAGGACCAACGAACAAGGTGGGTTGGAACAGATAGACAAACATGAGAAGAAAAGCTATGAGATCGCGTTCCGAAACACTGAGGTGGGGAAAAACCTGATTAACAGCATAAAAGAGATGCGGCCAAAGAAGGAGAGGAAAGTGCGTTCCCGGATGGGATACATGCAATGCAGCCAGTGTCCCGTTAAATACAGGTTCCACTCCAAACTGAAGGACCACATGAAAACAGAGCATGGTATTGGGCTTTACATCTGCAAGCTCTGCAAGTTCATGACCGAGCAACAGAAAGAGTACCACGGTCACATGGAGGAGCATTTGGACGTGTTCATTTGTGACGACTGCGGCATGTGCTTTAAGAAAAGATCCACCATCATACATCACTTGAAGAGGCACCAGGAGTCCAAAACTCTTAGAGTCCGGAAAGGAGCCCACGTCTGTGAGATCTGCGGCCAGATCCTGCCGAATGCGCTCCATTTGAAAGACCACTATGACAAGAAGCACGATAAGAAGTACACGTGTTTCTACTGCGGACGCAGCTACAAGGGGGAGGCGGCGTTCGAGTCACATATTAAGAAACATGAACAGCACACTGGGACTAGCAGTGACAAATTCACCTGCCGCATATGCCAATCGACTTTCTCCTCCACGTACCGACTCGACAAGCACATCTCCGCGGCGCACGGCGCCACCACGGCGCTGGCCTGCGCTGTGGAAGGCTGCGAGCGCACGTTCAAGTCCGAGGCAGCGCTCAAGGCGCATACTAAGGCGCACAGCTCGGAGTTCAGCTGCGAGATGTGCGGTCGCGGGTTCGTGGATGCGCGTGCGCTGCTTTGGCACCAGAGATTGCACAACAACGAGAGACCTTACACGTGCAAGGAGTGCGGTCGCGGCTTCGTGACGGCTTACCGACGCAATGCTCACGCGCTGACTGCCCATACCGCGCCCACGCGCCGCTGTCCGCTCTGCCCCGCACTCTTCCATCTTCGCTCTATGGTCAACTCGCACATTAAAAAGGTACACCTGAAAGCGCACAAGCGGCGTAACCGCACCAACCGATGGACCAACGCTTCTAGCGTGTGTTGGCCCACTGAGGCCGTTCCTCTGCAGGAACTCAGCGTCGACATACAGAGCGATCTGCTCGAGATGCGCACTTACGCGATGCGAGCTCGTCGCGATTGCGCGGCGACGTCGTGGCGTGCGATCCGCGTTTTGGTCACTCTTACCCCCAGTTTCTCGTACACTAACACGCTGTTAATCTACTGTTAA
Protein Sequence: MVSVDMKNVVSHLVNGTLGENLCRVCLSPLDRTCESIFTEICKDDKAYSIADVLENVAQIKLNREDNYCVCSTCFCIASIAYKFYHTCQRTEAILRFYVSELESNVTLLEQPIENPGESYCISLPLIKTVDTFDYDVEGKAPQSPAKELTLCRHSDKLDVLVRKVKDELLISGAEDGQEDDEEELEEDVLMVLDESFKRKYFRTNEQGGLEQIDKHEKKSYEIAFRNTEVGKNLINSIKEMRPKKERKVRSRMGYMQCSQCPVKYRFHSKLKDHMKTEHGIGLYICKLCKFMTEQQKEYHGHMEEHLDVFICDDCGMCFKKRSTIIHHLKRHQESKTLRVRKGAHVCEICGQILPNALHLKDHYDKKHDKKYTCFYCGRSYKGEAAFESHIKKHEQHTGTSSDKFTCRICQSTFSSTYRLDKHISAAHGATTALACAVEGCERTFKSEAALKAHTKAHSSEFSCEMCGRGFVDARALLWHQRLHNNERPYTCKECGRGFVTAYRRNAHALTAHTAPTRRCPLCPALFHLRSMVNSHIKKVHLKAHKRRNRTNRWTNASSVCWPTEAVPLQELSVDIQSDLLEMRTYAMRARRDCAATSWRAIRVLVTLTPSFSYTNTLLIYC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01546093;
90% Identity: iTF_01543298;
80% Identity: -