Basic Information

Insect: Yponomeuta padella
Gene Symbol: -
Assembly: GCA_947311075.1
Location: OX371256.1:7348188-7352438[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0038 0.26 12.3 0.3 1 23 71 93 71 93 0.99

2 9 4.3 2.9e+02 2.7 0.0 3 23 120 141 120 141 0.95

3 9 0.038 2.6 9.2 0.2 2 23 166 188 165 188 0.95

4 9 3.3e-05 0.0022 18.8 0.5 3 23 196 217 195 217 0.98

5 9 0.00051 0.034 15.1 1.0 3 23 224 245 223 245 0.97

6 9 0.0033 0.22 12.5 1.7 1 23 249 272 249 272 0.96

7 9 0.00061 0.041 14.8 0.7 2 23 279 301 278 301 0.94

8 9 0.00043 0.029 15.3 2.8 1 23 307 329 307 329 0.97

9 9 0.001 0.07 14.1 1.2 1 22 335 356 335 358 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0038	0.26	12.3	0.3	1	23	71	93	71	93	0.99
2	9	4.3	2.9e+02	2.7	0.0	3	23	120	141	120	141	0.95
3	9	0.038	2.6	9.2	0.2	2	23	166	188	165	188	0.95
4	9	3.3e-05	0.0022	18.8	0.5	3	23	196	217	195	217	0.98
5	9	0.00051	0.034	15.1	1.0	3	23	224	245	223	245	0.97
6	9	0.0033	0.22	12.5	1.7	1	23	249	272	249	272	0.96
7	9	0.00061	0.041	14.8	0.7	2	23	279	301	278	301	0.94
8	9	0.00043	0.029	15.3	2.8	1	23	307	329	307	329	0.97
9	9	0.001	0.07	14.1	1.2	1	22	335	356	335	358	0.84

Sequence Information

Coding Sequence: ATGGGTGTGGAAAGCCCTAACCCACCGCCCTCGAGGATCGAATTAAAATCAAAAAGATCGCCCAAAATCTCGGCAACACTCATATCGGGCTTTGGAAAATGGTCTAGGACCACTTTGGCGAACAAGCAGAAAAGGAAAATCATCAGAAAGAATAACCTGCAAGTGTTGCTGTACTCAAACCTCATGCCCTTTCGATGGCTAAAGACAGCCTACAGATGCTTCTATTGCTACGAAATACTTGAGGACGTCGCGGATTTGAAGCAACATCAATTAACGCATAATGACGTCGAAGAAAAGGAAAGGGTATTGACAAACTACTGCGAATCTTTGATCTACGTAGACGTTTCCAACATAGGTTGCAAACTCTGCGACGATTCGGTGGCCGATCTCCAGGGGCTTGTAGAGCACTTGGTAACCAAACACAGCGTCGCATACGACAAGAATATCGGCAATTCGTTAATCACATTCCGACTTGAGGGCGTCGGCACCACAGTTAGTTGCGCCACGTGCAGCGCCGCTTTTAACACTTTTGGAATGTTACTGACACACACTAATAAAGACCACAAACTCACCACTGGCATTCTGTGCGAGATATGCGGGCTGCATTTCAAGAACGCTAATCTTCTGAGGATTCATATCAAGTCCATTCACGAGCAAACTGAGATACTCTGCACCGTGTGCGGTGAGAAATTTGAGACGAAGAACAAACTTCTCACCCACGAAAGAAATTTCCACAACAAGAGATACAAATGCCAGGTCTGTCCGGAAACGTTTCAGAGCCACTACAAGCGATCCTGGCATATGGCGTCCGAACACAAGACCAGGAGTGAAATCCCATGCTTGCATTGCCCTAAGACGTTCGTCTTCCGGAGCACTATGATGTCTCATGTGAAGCTGGCACACCTCAACGAAAGGAATCACGTCTGCAGCGTGTGTGGCTGGAAGACTTACACGAAGAACAAGCTGAAGGATCACATGTACAAACACAGCGGTGAAAGGAACTTCAAGTGCGAGGGGTGCGATAAAGCGTTCACGACGAAGAAAATTATGAAGACTCATTTTGTTCGCATTCACAAGAACAAAGGCTTTGAGAATGGAGCTGGCTTTTCTAATGCCTAA
Protein Sequence: MGVESPNPPPSRIELKSKRSPKISATLISGFGKWSRTTLANKQKRKIIRKNNLQVLLYSNLMPFRWLKTAYRCFYCYEILEDVADLKQHQLTHNDVEEKERVLTNYCESLIYVDVSNIGCKLCDDSVADLQGLVEHLVTKHSVAYDKNIGNSLITFRLEGVGTTVSCATCSAAFNTFGMLLTHTNKDHKLTTGILCEICGLHFKNANLLRIHIKSIHEQTEILCTVCGEKFETKNKLLTHERNFHNKRYKCQVCPETFQSHYKRSWHMASEHKTRSEIPCLHCPKTFVFRSTMMSHVKLAHLNERNHVCSVCGWKTYTKNKLKDHMYKHSGERNFKCEGCDKAFTTKKIMKTHFVRIHKNKGFENGAGFSNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01543307;
90% Identity: iTF_01543307;
80% Identity: -