Ypad007400.1
Basic Information
- Insect
- Yponomeuta padella
- Gene Symbol
- -
- Assembly
- GCA_947311075.1
- Location
- OX371256.1:7409418-7419824[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.63 42 5.3 0.7 1 23 228 250 228 250 0.93 2 16 0.11 7.1 7.8 0.0 2 23 278 300 277 300 0.93 3 16 2.6 1.8e+02 3.4 0.1 3 23 322 343 320 343 0.93 4 16 0.00038 0.026 15.5 1.1 1 23 348 371 348 371 0.97 5 16 0.00019 0.013 16.4 0.4 1 23 376 399 376 399 0.95 6 16 1.3 90 4.3 0.6 1 23 401 424 401 424 0.94 7 16 2.9 1.9e+02 3.2 0.5 2 22 431 451 430 451 0.94 8 16 0.01 0.68 11.0 3.0 1 23 504 527 504 527 0.96 9 16 0.058 3.9 8.6 0.1 2 23 555 577 554 577 0.95 10 16 1.8 1.2e+02 3.9 0.2 1 23 599 624 599 624 0.90 11 16 0.0002 0.014 16.3 1.8 3 23 631 651 630 652 0.95 12 16 0.027 1.8 9.6 0.1 3 23 659 680 659 680 0.97 13 16 4.7e-05 0.0031 18.3 0.9 1 23 685 708 685 708 0.94 14 16 0.011 0.75 10.9 3.5 1 23 712 735 712 735 0.94 15 16 2.5 1.7e+02 3.5 1.4 2 23 742 763 741 763 0.86 16 16 0.0018 0.12 13.3 2.8 1 23 769 791 769 791 0.97
Sequence Information
- Coding Sequence
- ATGGAGTTAGACGTTGGTGTTGCAAAGGAAATACCCGGTATATGTCGCTGTTGTTTATCTGAAGGATGTTTCAAGGCTCTGGGGCTGTCTTACCCGTATTACAACGAAGTGGAAGACTACGAGAAAATGCTCATGGACTCGCTGAATATTTGCATAACACAACACAGTGACGGTCCGAATGGACCCAGCCGGCTGATCTGTGAGCCATGCATCATGCGACTACGCGACTCCTGCAACTTTAAGAAACAGGTGCTTGACTCCGAGAAGCGTTTCATAGAAATGCTGCAACGAAGAGAGTTCCAAACTAAAGTAGAGGCAGTACAAGAAGATCAAATCAAATCTGAACCGGAGCCAGAAATGCAACATGAAGATGGAGATGGAATCGACGAAGGTGACTTCGATATGTCTGATGATGACGCCAAGCCGCTCACTGCGCTCAAGCGGCGTCTCCCGAGAGGAGAGAAGCCGGCGCCGGCTCCTGGGGTCACCGTGGAGGCCCTGCCCGCGAGAAGGGCCCGCGGACGTCCCCGCAGAACCGGAAAGGCAGCCGAGACAGAGCGGAGGACGAAAACGAACCCCCCCAAGGCGACTCAAGAGAATCGCCCGACGCGGCGACGTCAGCGGAACCTGGAGACGCTATTGAACAACACCACTGTCATCCCTTTCAAGTGGCGCGGAAACTACCTATGCTTCTACTGCGGATCGACCCTTCAGGAATACACAGAGCTAAGGAAGCACACCCTAGCCCACGGGAAATGTAGCTACAGGGACTATGCAATCAAATCTATCCGGTCCGCCGAGGCCGAGATCAAAATCGACGTGTCAGATTTAATCTGCGAAGTGTGCAACGAGCCGTTCGCCGATTTCGAAAAGGTCGTCACGCATTTGAACTTGAAACACAACGCGAAGTTCGACTCGAAGGTTAGCCTGAATCTGGCTAAGTATAGGCTGGCGGATTTAGCGTGCCTAGAGTGCGGCGAAGTGATGGGCAGCTTTAGGAAACTAGTCGGCCATATGAATAAGAATCATCCAGTGAACACGTACGTGTGCGAAGCGTGTTCCCGGACGTTTTCTAAGCGGAGAGACTTGATGTCGCACGTCAGAAACTTTCATAAGAACGGCGGGTACAGCTGCGACGAATGTGGCCTCAACTTTGAGAGCTCGACTAAGTTGAGGGCTCATAAGGAGAGCAGCCATCCGCACGTTTGCGCGGTATGTTTCTCAGCCTTCGCCTCAGTCGATAAGAAGCGGCAACATATGAATGAGATGCATCTTAAAGACGGCGCCTCTGAGTGCGAATTCTGCAAAACTACTTGGAATACTAAGCAAGCTTACTTGCAACATTTACGCCGATGCAAAGCTAGGAAAGACGTTTCTGTCAACGTTGTGGCGGAAACGCTGAGCGAAGTCGACGTTGGCCCGTACAAGGAAGTCAAATCGATCAGGCAAAACATCGCCTGTATCATAAACTGTTCTAATGCCATACCGTTCAAATTCTACATGAGCACGTTTCGATGTTTTTTCTGTCCGACTAACTTCACCGAATGTGACCAGTTGAGAATTCACACTAACTTGGAACACCCCGTATGCGACGTCAAACATAGCAGCATGAGAATGAGGGCGCGACAAGACGTCGATATCAAAATAGACATAGCCAATCTCACCTGTAAGATGTGCTTACAAAGCGTACGCGATTTGGACGCGTTAATCGACCACCTAGTCACTAAACACGAAGCAGAATACGATAGAACTACGAACGTAAAACTCCTACCTTTCAAGCTACTAAAAGACAAATACCCGTGCCTTTTATGCAACGAATCGCAGGAATTCAAATTCTTTGTCAACTTACTTAAGCACGTGAATGAAGCGCATTCGAACAACAAAGTTCTGTGCGTCTATTGTGGAGAAGCGTTTCGGTCTAAGAACAACATGAGGTCACATGTCCAGAAACACCACGCTCCACCGAAGATCGGTTGTCCTGAGTGCGATCTAGCTTTCCACACGGGGAACAAGCTAGCCGCTCACATAGCGAAGATCCACGGCAAAAACGTGTACAAATGCAGCAAGTGTCCCGAAAGGTTCTCCACGCCTTACCTGAAGCGGCGTCACATGATAGACGAACACGATATTGGCTGCAAATGTCCGCACTGCAATAAGATGTTCACAGGCAACGCGATAATGCTGTCccatattaggaggacgcatctgaaggagaaaactgtggagtgtccggtgtgccacttgaaaatgttcgacgttcacatgatgaagattcacatggtaagacatgatggcgaaaggaatttccattgcgatctctgcggcaagaagtttatgtggaagaagaatctgaggaaccatttgagtgtccacgataaGAGTGTCTGA
- Protein Sequence
- MELDVGVAKEIPGICRCCLSEGCFKALGLSYPYYNEVEDYEKMLMDSLNICITQHSDGPNGPSRLICEPCIMRLRDSCNFKKQVLDSEKRFIEMLQRREFQTKVEAVQEDQIKSEPEPEMQHEDGDGIDEGDFDMSDDDAKPLTALKRRLPRGEKPAPAPGVTVEALPARRARGRPRRTGKAAETERRTKTNPPKATQENRPTRRRQRNLETLLNNTTVIPFKWRGNYLCFYCGSTLQEYTELRKHTLAHGKCSYRDYAIKSIRSAEAEIKIDVSDLICEVCNEPFADFEKVVTHLNLKHNAKFDSKVSLNLAKYRLADLACLECGEVMGSFRKLVGHMNKNHPVNTYVCEACSRTFSKRRDLMSHVRNFHKNGGYSCDECGLNFESSTKLRAHKESSHPHVCAVCFSAFASVDKKRQHMNEMHLKDGASECEFCKTTWNTKQAYLQHLRRCKARKDVSVNVVAETLSEVDVGPYKEVKSIRQNIACIINCSNAIPFKFYMSTFRCFFCPTNFTECDQLRIHTNLEHPVCDVKHSSMRMRARQDVDIKIDIANLTCKMCLQSVRDLDALIDHLVTKHEAEYDRTTNVKLLPFKLLKDKYPCLLCNESQEFKFFVNLLKHVNEAHSNNKVLCVYCGEAFRSKNNMRSHVQKHHAPPKIGCPECDLAFHTGNKLAAHIAKIHGKNVYKCSKCPERFSTPYLKRRHMIDEHDIGCKCPHCNKMFTGNAIMLSHIRRTHLKEKTVECPVCHLKMFDVHMMKIHMVRHDGERNFHCDLCGKKFMWKKNLRNHLSVHDKSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01546051;
- 90% Identity
- iTF_01544299; iTF_01543276; iTF_01546963;
- 80% Identity
- -