Ypad004751.1
Basic Information
- Insect
- Yponomeuta padella
- Gene Symbol
- -
- Assembly
- GCA_947311075.1
- Location
- OX371257.1:3941156-3956726[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.014 0.96 10.5 5.1 1 23 183 205 183 205 0.98 2 10 0.13 8.7 7.5 3.7 1 23 212 235 212 235 0.85 3 10 0.0031 0.21 12.6 2.4 2 23 269 291 269 291 0.95 4 10 0.0014 0.091 13.7 0.1 1 23 295 317 295 317 0.97 5 10 3.6e-05 0.0024 18.7 0.8 2 23 325 347 324 347 0.95 6 10 0.0029 0.2 12.7 2.1 2 23 354 377 354 377 0.92 7 10 3.1e-07 2.1e-05 25.2 0.4 1 23 385 408 385 408 0.96 8 10 0.0011 0.071 14.1 3.5 1 23 414 437 414 437 0.98 9 10 9.9e-05 0.0066 17.3 0.4 1 23 445 467 445 467 0.97 10 10 0.001 0.067 14.1 0.7 1 23 473 496 473 496 0.93
Sequence Information
- Coding Sequence
- ATGGCCGACATGATTTGCTACGAGTGCAGAGCATTACTCGGCAATTTCGTCAAGTTCCGGACCCGCGCGCTCCGCGCCGAGAGGTTGCTGGCGTGTGTGCCATCAAGCTGTCACTTGCCACAAACAAAGATATTGGAAATATTTTCCACTTCCGGTATCAAGTCTCTCTCTTCGCTGACACAAACTGTCATAATGCCACACAACACCATCTATGTGGACGGTGACTTAACGCGAGTAAAGGTAGAGGCAGACTCTGAGACGGATGTTAAAGCAGAAACACTGGAGTTAACCGTAGGGCCTTTGTCGGTTCCAATGAAAAAAACGCTGGAAACTGAGGTAAAACAGAACGGTGACGACAACTCTACGACGAAATATGAACCGGCAGATGATGATATGGAATCGGACAGTGGCTCTGAAGATGGTGAAGCGCAGCAGATCGAAGACCCCCTCATCACGATGCATTTCACCGCCAAACCCATGGAGCTAAACGAAGTCCTCTCCCACATGGAGAAAACTCGGAACACGACCCGCTTCAAGCGGGCCCAGTACAAATGTAAAAAGTGTGCACTGGTCTTCACCACAGAGTTGCATTACAAAACGCACAGTAAGAGACACAGTGGCAAACGAGGATGCTTCAAATGCGAAGTCTGCAAGCAGAGGTACAAGAATAACAGTAAAGCGCTGAAGAGGCACACAGCGAGACATTATACCCGCTACGCGTGCCGCCACTGCCCGCGCAGCTGCTTCGGCTACTCGCAGATGTACTTCCACTACCGCAACGTCCACGACGAGAGCACGCCACGCCAATGCTCCAAGTGTCCCGCCAGCTTTAAgaactacAGGGAGCTGCTTCAACACAAACATCGCGCCCACGGTCGCAAGTATCCGTGCCTGAGCTGCGACCGACAGTACGCGACTAGTGTCGGCCTGTGGCGACACAGGCTAGTACATGATGACACAGTCCCAGAGCTAGAGTGCGACATCTGCCACAAAAAGTACAAAGGGGAGCCCAATTTGAAGAAGCACATCCGAGATGTGCACGAAACGAATCCCGGCGCCTACTGCACGGAGTGCGACCTTCAATTCAAGACCACGAACCAGTACCGTCAACACCTAAACACGTCCAAACACGTCCCGTCAGCAGAGTACAGATTCGAGTGCGACTACTGCGGCAAGAAATTCACCCAAAAGCCCACTCTGAACCAGCACATTGAAGTTATACACCTCAAGCTCTCCAAATACAAGTGCGAATATTGCGACGAGACGTTTCACACCAAGCGATACGCGGCAAATCACGCTCGGAAGAAGCACAGCGAACCGAGGGGCAAGAAGTTCGTCTGCCACATATGTGCGAAGGCTTTCGCGATAAGGAAGTCGCTCAACGAACATATGAACGGACACCTCGGTGTTCGCCCCTTCGAATGTAAGCTGTGCGGTGCGAATTTCGCCTACAACTCTGCCTTGTATCATCACAACCAGTTGGTGCACTTGAAGAAGGCGAGGAAGGGCAGATGCACTTGA
- Protein Sequence
- MADMICYECRALLGNFVKFRTRALRAERLLACVPSSCHLPQTKILEIFSTSGIKSLSSLTQTVIMPHNTIYVDGDLTRVKVEADSETDVKAETLELTVGPLSVPMKKTLETEVKQNGDDNSTTKYEPADDDMESDSGSEDGEAQQIEDPLITMHFTAKPMELNEVLSHMEKTRNTTRFKRAQYKCKKCALVFTTELHYKTHSKRHSGKRGCFKCEVCKQRYKNNSKALKRHTARHYTRYACRHCPRSCFGYSQMYFHYRNVHDESTPRQCSKCPASFKNYRELLQHKHRAHGRKYPCLSCDRQYATSVGLWRHRLVHDDTVPELECDICHKKYKGEPNLKKHIRDVHETNPGAYCTECDLQFKTTNQYRQHLNTSKHVPSAEYRFECDYCGKKFTQKPTLNQHIEVIHLKLSKYKCEYCDETFHTKRYAANHARKKHSEPRGKKFVCHICAKAFAIRKSLNEHMNGHLGVRPFECKLCGANFAYNSALYHHNQLVHLKKARKGRCT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01544251;
- 90% Identity
- iTF_01544251;
- 80% Identity
- -