Basic Information

Insect: Yponomeuta padella
Gene Symbol: -
Assembly: GCA_947311075.1
Location: OX371257.1:8265164-8279706[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 6.7e-05 0.0045 17.8 2.5 1 23 151 173 151 173 0.99

2 11 0.0016 0.11 13.5 0.4 1 23 180 202 180 202 0.97

3 11 0.049 3.3 8.8 0.2 1 23 206 229 206 229 0.97

4 11 0.37 25 6.1 5.2 1 23 236 258 236 259 0.96

5 11 5.4e-06 0.00037 21.3 0.6 3 23 266 286 265 286 0.97

6 11 0.00048 0.032 15.1 5.2 1 23 292 314 292 314 0.99

7 11 0.00044 0.029 15.3 2.9 1 22 320 341 320 345 0.92

8 11 0.00013 0.0087 16.9 0.1 1 23 353 376 353 376 0.97

9 11 0.017 1.2 10.3 0.1 1 23 382 404 382 404 0.94

10 11 4.1e-05 0.0028 18.5 2.0 1 23 413 435 413 435 0.98

11 11 0.013 0.84 10.7 1.2 1 23 441 464 441 464 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	6.7e-05	0.0045	17.8	2.5	1	23	151	173	151	173	0.99
2	11	0.0016	0.11	13.5	0.4	1	23	180	202	180	202	0.97
3	11	0.049	3.3	8.8	0.2	1	23	206	229	206	229	0.97
4	11	0.37	25	6.1	5.2	1	23	236	258	236	259	0.96
5	11	5.4e-06	0.00037	21.3	0.6	3	23	266	286	265	286	0.97
6	11	0.00048	0.032	15.1	5.2	1	23	292	314	292	314	0.99
7	11	0.00044	0.029	15.3	2.9	1	22	320	341	320	345	0.92
8	11	0.00013	0.0087	16.9	0.1	1	23	353	376	353	376	0.97
9	11	0.017	1.2	10.3	0.1	1	23	382	404	382	404	0.94
10	11	4.1e-05	0.0028	18.5	2.0	1	23	413	435	413	435	0.98
11	11	0.013	0.84	10.7	1.2	1	23	441	464	441	464	0.94

Sequence Information

Coding Sequence: ATGCGATCGCTGTGCAGGCCGGAGCAGGGGGAGACGGAGGCCGAGCCGAGGCCGAGGCCGGCGCCGCGCCGCGCGGCCGAGGCCGTGGACCCGGACAAGATCCGGCTCATTACGCTCAACCCGGAGGAGCAGGTTGGCTTGCTGCTCGAGGCGCGGCCCACACAGACAGGACGCGGGCTACGGCCCGGAAAATACGCGACGCGAGAGCTGTGCTCTGTGACTCGGTACAGAGGGTCGCGTCTCCTTCGCGCCCTCGCCCCGCGGCTCGGCCTCTCTGTGTGGCCCACGCCCGAGGCCGCTGTTACGTCTAGCATGCCGTCTCGTTTGCACGATAGGTACGGAACCGTAACAAAAGGTGTTAAGGTGATGCCGATAACCATGCCTCGTTTACATGGCTCGCAGCTGCGGCAGATGCAGGAGGAGAGCCGGGCGGACGGCGCGCGGCTGCCGTTCAAGTGTGCCCTCTGCTTCAAGGGGTTCAACTACGAGACCAAGCTGCAGAACCACATGCGGCGACACAGCCCGTCGCGCGGCCCGTTCGCGTGCGCCCTGTGTCGCACGCACCTGCCCTCCGCGTACTCGCTGCGCGTGCACATGCGCGTTCACACGCTGCGCTACGAGTGCCGCGTGTGCGGGCGCCGCATGGTGGACCGCGGCAGCATCGTGGAGCACTACCGCTCGCAGCACGAGGGCATCGTGTCGCAGTACACCTGCCAGCTGTGCGGGAAGCTCTCCAGCAACAGCAAGACGCACCGCGGACACATGCGCAACCACCACGGCGGCGCGCGGCCCGCCTGCCACCGCTGCGGGAAGACCTTCGTCAACAAGGACTCGCTCGCCGAGCACCTGCTGATCCACGAGGGCGTGAAGAACTACCAGTGCGAGAAGTGTGAGCAGCGGTTCCGCACCAAGAACCAGGCCAAGCACCACCAGCTCAAGCACAGCGACGTGCGCGACCACTACTGCGTCGAGTGCGACGTCAGATTCAAGTCGGCTCACAATTTACGTCAGCATCTTCAGAAAAGCCTCAAACACAAAGATCCCAAGACTTTTAAGTTCGAGTGCGCGGAGTGCGGCAAGCGCTTCGAGAGCGCGGCGCTGCGCGAGCGGCACGCGCGCGTGCAGCACGCCGGCGAGCGGCAGCACGCGTGCGGCGCGTGCGGCGCGGCGCTGGCCTCGCGCGCCGCGCTGCGGAAGCACGCGCGCCGCCACCTGCAGCCGCGCGCGCCGCCCTCGCACGTGTGCCACGCCTGCGGCCGGGCCTTCCGGGGCAAGTCCGTGCTGCAAAACCACGTGCGCACGCACACGGGCGAGAAGCCGTTCGCGTGCGCGACGTGCGGGCGCCGCTTCGCGCAGCGGACGGCCTGCCGCACGCACGTGCGGCTCGTGCACCTCAAGCTGCGCCGCGCAAAGATAAAGCCGGAGAGCGTGACTGTCACAACGGAGCAGGACGTGAAGCCCGCGCTCGAAGCGAAGCTGCCCGACCCCATGGAGGACAAGATGCCGGCCGACCTCGTCTCCTACTCCGACATCCCTGTCTACTTCTGA
Protein Sequence: MRSLCRPEQGETEAEPRPRPAPRRAAEAVDPDKIRLITLNPEEQVGLLLEARPTQTGRGLRPGKYATRELCSVTRYRGSRLLRALAPRLGLSVWPTPEAAVTSSMPSRLHDRYGTVTKGVKVMPITMPRLHGSQLRQMQEESRADGARLPFKCALCFKGFNYETKLQNHMRRHSPSRGPFACALCRTHLPSAYSLRVHMRVHTLRYECRVCGRRMVDRGSIVEHYRSQHEGIVSQYTCQLCGKLSSNSKTHRGHMRNHHGGARPACHRCGKTFVNKDSLAEHLLIHEGVKNYQCEKCEQRFRTKNQAKHHQLKHSDVRDHYCVECDVRFKSAHNLRQHLQKSLKHKDPKTFKFECAECGKRFESAALRERHARVQHAGERQHACGACGAALASRAALRKHARRHLQPRAPPSHVCHACGRAFRGKSVLQNHVRTHTGEKPFACATCGRRFAQRTACRTHVRLVHLKLRRAKIKPESVTVTTEQDVKPALEAKLPDPMEDKMPADLVSYSDIPVYF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01546888;
90% Identity: iTF_01543209;
80% Identity: -