Ypad023363.1
Basic Information
- Insect
- Yponomeuta padella
- Gene Symbol
- -
- Assembly
- GCA_947311075.1
- Location
- OX371254.1:11349258-11352258[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00092 0.062 14.3 0.5 2 23 172 194 171 194 0.93 2 13 0.6 40 5.4 0.0 2 23 233 255 232 255 0.95 3 13 0.074 5 8.3 3.1 1 23 261 284 261 284 0.92 4 13 0.0017 0.11 13.5 0.1 3 20 291 308 290 310 0.93 5 13 0.00019 0.012 16.4 1.3 1 23 318 340 318 340 0.98 6 13 0.00019 0.013 16.4 4.8 1 23 344 367 344 367 0.98 7 13 0.0016 0.11 13.5 0.1 3 23 384 404 383 404 0.96 8 13 0.00033 0.022 15.7 1.3 1 23 410 434 410 434 0.92 9 13 3.7e-05 0.0025 18.7 0.2 1 23 446 469 446 469 0.95 10 13 4.2e-05 0.0028 18.5 4.2 1 23 475 497 475 497 0.98 11 13 0.00037 0.025 15.5 1.1 1 23 503 526 503 526 0.97 12 13 0.01 0.67 11.0 3.3 1 23 532 555 532 555 0.96 13 13 9.7e-06 0.00065 20.5 0.5 2 23 561 583 560 583 0.95
Sequence Information
- Coding Sequence
- ATGAACGATACAGACTGTGGTCTAAGTACAGACGATCGCATAAAATTTCTAGAAGAGGATTATGTTAAAATAAAATGTAACCTCAAAAACATTATAGAATCCGAGAAGTTCTGCGGAATATGCCTTGCTAACACCAGCCAGTACTATTTTTATATGTTGGACTTCACTGCTATAACCGATGATGATAGTGTATCCTTGGAGCAGATGCTTTGTGAAGTTTTCAGTGACCAGATGGCTGGTGAAATGTTGAGCAAATGCATCTGTAACATATGTATAGAGGAAGTGAAAAAAGGCTACCGGTTTCTTTGTAAAGTGAAAAACTATTCACTTATCGTAAACAAATTGTTGGAACAGATCAATGAACAAGTGGAGGAGGTCAGTTCGCTTGCAGTCGATCCTGAAGACAATATAAGTAATTTTATCATTGGTATCCAAGGATTTGACCCTGAAACAATCAAGACAAATCAACACAAAGAGGAAATAATTGAGAAGTCTGTGGAAACCCAACTCCTAATCTGCGATTATTGTGCAAGATCTTTTAAAGCAAAGTGGACCCTTAAAAAACATATCAGTGAAAAGCATTTGAAACAGAATTGCTTATCTATGAACTGTACAGAATGTCTCAACATGCCTTGCGTCCATGAGAAGTACTTGGCGTCAATGCGAGCGCAGAAATTGGCTGGTTATAAAGAGCTTCAGTGTCTGGAGTGTGACATTCGACTTGCAAACGTAGCAGATATGATTGCTCATGCGAACAGAGAGCATTTAAACATCTTTCCTTACCTCTGCGAGACTTGTGGGCGTGCTTTCCCGTCAAAAAAGTCCCACAACACGCATACGAAACAATTTCACACGGTCGAGAAACGTATATGCCAATACTGTGACCGTAGATTTACCAACAAGGAAGTGCTCTATATTCATATAGAGCAATGCCAGATCGTAACTAGAAAATATATGTGCGATTTGTGTCCAGCCTCGTTCAACTCACAACAGAGCCTGCAAATTCATCATAGTAAGCATTTAAACAAGTTTCAGTGTGCTATGTGCTCAAAATCCTTTTATACCCACTTCACTTTGTTGCGGCACCGGAGACGTGTACATGAACTTGTCACCAAGCCTCCTAAGAGGCAACGACCGGCCGATAGAATGTGCTCCATTTGCCCAGCTAAGTTTCCAAACCTGACTCAACTTAAAGAACACTTGGGGATGCACGGGCCAAATGAAAAACACAAGTGTGAAGTCTGTGACAAACAGTTTGAGTCACGTAAAGCGTACACAGGCCACATCCGATCCTACCCGCATCAGATACGTCTCAATCCCAATAGAAACTTCAGTTTCCCTTGTGCCGACTGTGATAAATCATTCCCATCAACGAAAATGCTAGAAAACCACAGGAATCTTATTCATTTGAAGATTAAACCTTATGTCTGCCAGACGTGCAACAAAGCATTTACCACGGGAACACATCTAAAGCATCACCTACAAATACATGAAGGCATTAAGAAATATCAATGTAGTCAGTGTAGCATCATGCTGACCACATTATCCAGCTTGAAAAAGCATGTGTTGAGATACCACTCTGATAAAAAGCCGTATTCTTGCAATATGTGTGACAAAACTTTTGTCTGCAGGAGTGAGATGTTACAGCATACATTGAAAAACCACTCTGATATGACAATCTCGTGTCCTATATGTGGAGGTATCTTCAGACATAGATCTAATCTGAAGAGCCACATCTATAAAGTTCATATGAGAGACAAAGATTTGCAGGAACTTCTAGAAGAGCATAAACATAACACTGAGTTGATTGAGTTAATGCACGATAGGCGAAATCAACGTATTGATAACTCTCAATTTTGA
- Protein Sequence
- MNDTDCGLSTDDRIKFLEEDYVKIKCNLKNIIESEKFCGICLANTSQYYFYMLDFTAITDDDSVSLEQMLCEVFSDQMAGEMLSKCICNICIEEVKKGYRFLCKVKNYSLIVNKLLEQINEQVEEVSSLAVDPEDNISNFIIGIQGFDPETIKTNQHKEEIIEKSVETQLLICDYCARSFKAKWTLKKHISEKHLKQNCLSMNCTECLNMPCVHEKYLASMRAQKLAGYKELQCLECDIRLANVADMIAHANREHLNIFPYLCETCGRAFPSKKSHNTHTKQFHTVEKRICQYCDRRFTNKEVLYIHIEQCQIVTRKYMCDLCPASFNSQQSLQIHHSKHLNKFQCAMCSKSFYTHFTLLRHRRRVHELVTKPPKRQRPADRMCSICPAKFPNLTQLKEHLGMHGPNEKHKCEVCDKQFESRKAYTGHIRSYPHQIRLNPNRNFSFPCADCDKSFPSTKMLENHRNLIHLKIKPYVCQTCNKAFTTGTHLKHHLQIHEGIKKYQCSQCSIMLTTLSSLKKHVLRYHSDKKPYSCNMCDKTFVCRSEMLQHTLKNHSDMTISCPICGGIFRHRSNLKSHIYKVHMRDKDLQELLEEHKHNTELIELMHDRRNQRIDNSQF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01543176;
- 90% Identity
- iTF_01543176;
- 80% Identity
- iTF_01543176;