Ypad007437.1
Basic Information
- Insect
- Yponomeuta padella
- Gene Symbol
- -
- Assembly
- GCA_947311075.1
- Location
- OX371256.1:7701549-7704621[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0014 0.094 13.7 0.3 1 23 41 64 41 64 0.97 2 19 0.04 2.7 9.1 0.0 2 23 91 113 90 113 0.92 3 19 1.1 73 4.6 1.0 3 23 137 157 136 157 0.96 4 19 6.8e-06 0.00045 21.0 0.0 2 23 162 184 161 184 0.97 5 19 0.00045 0.03 15.2 0.8 1 21 188 208 188 209 0.95 6 19 2.1 1.4e+02 3.7 0.6 1 20 216 235 216 239 0.83 7 19 0.081 5.4 8.1 2.8 1 23 246 269 246 269 0.93 8 19 0.041 2.8 9.1 1.6 3 23 275 296 274 296 0.95 9 19 8.4e-05 0.0056 17.5 2.2 1 19 302 320 302 321 0.97 10 19 0.0098 0.66 11.0 2.1 2 23 361 383 360 383 0.97 11 19 0.019 1.3 10.1 0.5 2 23 409 431 408 431 0.91 12 19 0.016 1.1 10.3 1.2 3 23 455 475 453 475 0.96 13 19 3.6e-06 0.00024 21.8 0.8 1 23 479 502 479 502 0.94 14 19 0.009 0.6 11.1 0.8 1 21 507 527 507 528 0.96 15 19 0.0022 0.15 13.0 1.0 1 23 535 558 535 558 0.93 16 19 0.0059 0.4 11.7 4.6 1 23 565 588 565 588 0.94 17 19 0.012 0.78 10.8 0.3 2 20 594 612 593 615 0.90 18 19 3.8e-05 0.0025 18.6 0.3 1 20 621 640 621 643 0.94 19 19 0.0027 0.18 12.8 4.6 1 23 649 671 649 672 0.94
Sequence Information
- Coding Sequence
- ATGACCGAACGTTTTCCTTCTTTTCTAGAATTGACAGACAGCAGAGCCATCGCGAGACGAAACGCTATGATCATAGTGAAGTACGCAACGGCTTACCCGTTCAGAATACCAGAGAGCATCTTCCGTTGCGTCTATTGCTCGAATAGCTTCGAGGATCCTATTGAGTATCGGTCTCACATGGAGAGCGAGCACAATTCGTTCAAAGTAAAAGAAGCGTTCAGTCATTACAAAATGTATGAGCAGTACGTAAAAGTTGACTGCACCGATTTACGCTGTCGTCTCTGCGGTGAAGCTTTCGATCAGTTAGATGAAATCGCAATACACTTGAGTTTAGACCACGGCAAAGATGTCGACCTTAATTTTTCTTTAGGTTTGCAAATATTCAAGTTTGGCCACGAGAAATGGCTGTGTGCCATATGCGACGCCAAGTTCCCGTGTCTTAGAGAGTTGAGCCGTCACACGTCTTCACACTATTACAATTCGACCTGTGAAATCTGTGGCAAATCCTACGTGGGCGCGGACAGTCTCGCCAAACATATACGCATAGCGCATGACGACGCTTTCTATTGCACCAAGTGCCCAAAGAGTTTCCCTACATTAGAATCGAGACGCGAGCATATGAAAAACAGCAAACCGTGTTGGCGGTACACCTGCAATTTCTGCGCCGAAAGATTCCAAACCCAACTAAGAAAGGAGAGACATTTAGTCGATGTCCACGATTTACCGCAACGAGAATATTCTTGCACAGAGTGCGGCGAAGTATTCCTCAAACGCTTGCAATTCAAAAAACATTTTACAAAATTTCACACAAACTATTGGCTTTGCACCGGTTGCAGTCAGAGATTTGGCTCTCAAGCATTGCTCAGAGAGCATAATATGTCGTGTCATCTTGGTATCAAGATGTACCATTGTGACGTGTGCAAAAAGTCTTTTTCGAGGAAGACTAACTTGGTTCAACATTCGTGGCAACATCTGGAAAAACGCTTCGAGTACGACACGTTAGTGACCACACGACGGAACGCTGCGATAATATTGACCAACACCACGGCTTACCCCTTCAGGCTCCCTGATAGCGAGATGCAGTGCGTCTACTGCTGTACTAGTTTCGAAAACCCACTAGATTTTCGCACACACATGCGCACCGACCACCCCTCCTATAACATGGATACAGCGTTCGCACATTGCAAATACGAAAGCTACGTAAAAGCGGACTGCACTGAGCTCCAGTGTAAAATATGCACTAAAATGTTCGATAAATTAGAAGATATTGCGATACACTTGCACGAATCTCACGATAAGAAAATTAACTTGAACTTCGAACTAGGAATTCTTCCGTTTCGGCTAGAGAACGATAAGATGGATTGCTACTTTTGCTCGAAAAATTTCTCCGGAATACGTCAATTGAGTAGGCACTTGTCATCGCATTATATGAAGTTCACGTGCGAATTATGCGGCAAATCGTACATTTCCAAAACTTCTCTTAGGCAACACATGCTATTCGGACACAGGGGGGATACGTACATTTGCAGAAAATGCAAAGAGCGATTCCAATCGACTGATGCGTACAAGCAACATATGAACGAGTCCACTGCCTGCTGGATGCACGTATGCAACATATGCGGAGAGCGATTCAAAGGTTGGCATCTGAAAGAAACGCATCTCATGGACGTTCATGGACGCCCCAGCAAAACATACCGGTGTAGGGAATGCGACAAAGTCTGTGACTCCAGGAAAACTTTACGTATCCATTTCAAATTTTCTCACACCGACGACGCTTTAGTGTGTTCTTACTGCGGCCAAAAGTTCGATTCTAAGAGATTTTTAGACGATCACTTGCCGGTGCATACCCAGGAGAAGCTTTTCACGTGTTCTGTATGCGCCAAACCCTTTGCCAGGAAGAAGAATTTAGAACAACACATGTGGATACACAGGGAAGAGAAGAGGTTTCAATGCATTACTTGTAATAAGAAATTTAATCAGCGAGTCAGTTGGAGAACACATATGAAATCACACCATCCTGAATACGGAGTTGTGTGA
- Protein Sequence
- MTERFPSFLELTDSRAIARRNAMIIVKYATAYPFRIPESIFRCVYCSNSFEDPIEYRSHMESEHNSFKVKEAFSHYKMYEQYVKVDCTDLRCRLCGEAFDQLDEIAIHLSLDHGKDVDLNFSLGLQIFKFGHEKWLCAICDAKFPCLRELSRHTSSHYYNSTCEICGKSYVGADSLAKHIRIAHDDAFYCTKCPKSFPTLESRREHMKNSKPCWRYTCNFCAERFQTQLRKERHLVDVHDLPQREYSCTECGEVFLKRLQFKKHFTKFHTNYWLCTGCSQRFGSQALLREHNMSCHLGIKMYHCDVCKKSFSRKTNLVQHSWQHLEKRFEYDTLVTTRRNAAIILTNTTAYPFRLPDSEMQCVYCCTSFENPLDFRTHMRTDHPSYNMDTAFAHCKYESYVKADCTELQCKICTKMFDKLEDIAIHLHESHDKKINLNFELGILPFRLENDKMDCYFCSKNFSGIRQLSRHLSSHYMKFTCELCGKSYISKTSLRQHMLFGHRGDTYICRKCKERFQSTDAYKQHMNESTACWMHVCNICGERFKGWHLKETHLMDVHGRPSKTYRCRECDKVCDSRKTLRIHFKFSHTDDALVCSYCGQKFDSKRFLDDHLPVHTQEKLFTCSVCAKPFARKKNLEQHMWIHREEKRFQCITCNKKFNQRVSWRTHMKSHHPEYGVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -