Yevo030535.1
Basic Information
- Insect
- Yponomeuta evonymella
- Gene Symbol
- -
- Assembly
- GCA_963969515.1
- Location
- OZ018372.1:4187533-4220668[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.18 15 7.1 3.2 1 23 414 436 414 436 0.97 2 11 0.00065 0.054 14.9 2.0 1 23 443 465 443 465 0.93 3 11 0.011 0.89 11.0 1.2 3 23 499 522 498 522 0.95 4 11 2.3e-05 0.0019 19.4 0.7 1 23 526 549 526 549 0.96 5 11 0.0059 0.49 11.9 1.9 2 23 556 578 555 578 0.93 6 11 0.14 12 7.5 1.4 2 21 587 606 587 611 0.93 7 11 0.00014 0.012 16.9 3.2 1 23 648 671 648 671 0.95 8 11 2.6 2.2e+02 3.5 0.1 1 9 677 685 677 689 0.85 9 11 0.093 7.7 8.1 0.9 8 23 719 735 718 735 0.93 10 11 4.3e-05 0.0036 18.6 2.1 1 23 745 767 745 767 0.99 11 11 0.0014 0.12 13.8 0.2 1 23 773 796 773 796 0.92
Sequence Information
- Coding Sequence
- ATGGACGTCCCATCGACAAGCTGGGCGAATCCTTATAAACACGAGCCCTTACAGTGTTTCGTACCGAAGTGTCCGTCGGATTCCCTTGCCTTTCCCAATAAGTTGTTTCTCTACGTGCCCAGGGAGCCAAAAGCCAGGGAAAAGTGGTTAAAAGCTGCAGGGAAGCTCCATGTACCTTCCACGGCCGACTTGCGGTGCTGTGAGGACCACTTCGATATCCATAATGACATTGAGTGGCCCATGGGAAGGCTAAAGCAGGCTGTAGTTCCTCATATTTTCGTTTGTCAACAAAGAACTACCGCAATGACTCCAGATTTAAAGCCTGAAGAACCAAAAACCTATAAAACCTTGGAAAATATGGAAGAGCTGGCTTACCCACCATACCAGTCGGCGCCCGTCCAACAGGGTACTACTAGTGTGGAATGGCCAAACATGTGCATGCAGACTCCGGTGTACCATCCTGCAGGAGTGCAGGGAGAACAAATGATTGGAAGAACACGCTCAAATGTTTCTCAGATAAAAGTGAAGAGCGAAAGCGCCACGCCGCTCAGAGAACAGGCCTGGCTGCCTGCGCCTGCGCCGCACCTCTGCTGCACCTGCCTGGCCACAGATCGATTGCTTTACTCCCTGAAGAACGCGCCGCAGTATTTGACCATATGCAACGGAGTCACGCTAAACAAAGACGATCTCGTCTGCTACGAGTGCCGCGCGCGTCTCGACCACTTCTTGAGGTTCCGGAGCCGCGCGCTGCGAGCCAGGCGGGCGCTCGCCTACATGCCGGCCGTCCGTAGACCTGGGACacagATCTCCGGCTTTCGTTGCCTCTCAACCCTGGCGCCGTCGGTAATACCAGCTGGTGACACCATATTCGCGGACGGGGACTCGATAGCTGTGAAGACGGAGACTGGGGAGCCCGATCTTGGGGTTGAACTCATCGTAGAGCCATTCAACACGCCGCTGTTCCCTTTTGAGAAGATGAAACTCGAGGGACGTAAGCAGGGGCAAGCAGAAGACTGGTGTGAACCCAAGCCGGACATGGCAAGCGCTGACGATAATGACGGAGATGATGACGTGGACGAGTCCGAAACGGACACGGCGTCCGAGACCGCTGAGGACAAGCAGAAAGAAGGAACTGCGCAGTTGTACCACGAAGACTTCATAGTGACGCAACTGACGTTGGAAGAGGTTCGCACGCACATGCAGAGCGAGCGCGAGACCCCGCGGTATCGCGGCGCGCGATATAAGTGCGCTCAGTGCGCCTTAGTTTTCTACCACGAGCGGCACATGCGCGACCACACTTTACTGCACGACGAGAATCGAGGCAAGTACAAATGTGTAATATGCGAACAGAGGTTCAAGACTCAGCACACGTTGAAAATGCACTCCGCGGGCCATTACAGCCGCTTCCAATGCCGCGATTGCCGCCACGTGGAGTTCAGTTACAAGAAGATGTATGAGCACTATCGGACAGCTCACGACAACACGCCTCGCTTCTGCCGCTACTGCGACACTTCCGAACGGTTCACGAGCTACGCGGAGCTCCGGAAGCACGTCCGGACGACGCACCGGCAGCCGCATCCGTGCGAGGTGTGCGACCGCTCCTTCAGGAACAACTCCATACTGCAGCGGCATATACTCATGATGCATACGAAGGTCCCCATAGTGGAATGCCAGTTCTGCCACAAGAAGTACAAAGGCGATTACAACCTGAAGAAACACGTTCAGGACGTTCACGAAAAGAAACCCGACGAGAACGCTTACTGCACGGAGTGTGACATGCAGTTCCCTACAATCCACCGCTACAGGAACCACCTCCGGAACTCAGGCAAACACGCGATACACCAGCCGGACAAGGAGTGCGAGATGCAGTTCCGGATAATTCACCGCTACAGGAACCACCTCCGGAACTCGGGCAAACACGCGATACACCAGCCGGACAAGTTTGAATGCGACCACTGTGGCAAGAAATGCAAAGAAAAGGCGTCCCTTCGCACTCACATCGAGCTGATGCATCTCAAACTGGCGCGGTACAAGTGCCCGCTTTGCGATGAGGTGAGAACTAACGTAAATATTAGCGACGAGGTGAGGACTAACATAAATCTTAGTTACGAAGTGAGAGCTGACGTAAATCTTAGGTACGAAGTGAGGAATAACCAGAGTTTCCCGACCAAGTCGTACCTGAATCGTCACAATCGCAAGAAACACACGATACCCACGACGCCCGCCAAGCGATACGTTTGCCATCTCTGCGAGAAGAGTTTCACGATCCGCAAATCGCTGGACGAACATATGAACACACACCTCGGAGTGCGGCCGTTCGTGTGCAAACTCTGCGACGCCACATTCAGCTACTCGGCCGCCCTGTACAATCACAACCAGCTCGTCCATTTGAAAGCGAAAGTGGGGCGAAACCGGAATACGATGTGA
- Protein Sequence
- MDVPSTSWANPYKHEPLQCFVPKCPSDSLAFPNKLFLYVPREPKAREKWLKAAGKLHVPSTADLRCCEDHFDIHNDIEWPMGRLKQAVVPHIFVCQQRTTAMTPDLKPEEPKTYKTLENMEELAYPPYQSAPVQQGTTSVEWPNMCMQTPVYHPAGVQGEQMIGRTRSNVSQIKVKSESATPLREQAWLPAPAPHLCCTCLATDRLLYSLKNAPQYLTICNGVTLNKDDLVCYECRARLDHFLRFRSRALRARRALAYMPAVRRPGTQISGFRCLSTLAPSVIPAGDTIFADGDSIAVKTETGEPDLGVELIVEPFNTPLFPFEKMKLEGRKQGQAEDWCEPKPDMASADDNDGDDDVDESETDTASETAEDKQKEGTAQLYHEDFIVTQLTLEEVRTHMQSERETPRYRGARYKCAQCALVFYHERHMRDHTLLHDENRGKYKCVICEQRFKTQHTLKMHSAGHYSRFQCRDCRHVEFSYKKMYEHYRTAHDNTPRFCRYCDTSERFTSYAELRKHVRTTHRQPHPCEVCDRSFRNNSILQRHILMMHTKVPIVECQFCHKKYKGDYNLKKHVQDVHEKKPDENAYCTECDMQFPTIHRYRNHLRNSGKHAIHQPDKECEMQFRIIHRYRNHLRNSGKHAIHQPDKFECDHCGKKCKEKASLRTHIELMHLKLARYKCPLCDEVRTNVNISDEVRTNINLSYEVRADVNLRYEVRNNQSFPTKSYLNRHNRKKHTIPTTPAKRYVCHLCEKSFTIRKSLDEHMNTHLGVRPFVCKLCDATFSYSAALYNHNQLVHLKAKVGRNRNTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -