Yevo028707.1
Basic Information
- Insect
- Yponomeuta evonymella
- Gene Symbol
- -
- Assembly
- GCA_963969515.1
- Location
- OZ018369.1:911355-913650[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.12 10 7.7 0.6 3 23 233 255 232 255 0.90 2 11 0.069 5.8 8.5 1.1 2 20 287 305 286 306 0.93 3 11 0.54 45 5.7 3.1 1 23 315 337 315 338 0.92 4 11 1.5e-05 0.0013 20.0 0.2 1 23 344 366 344 366 0.98 5 11 0.009 0.75 11.3 2.8 1 23 377 399 377 399 0.98 6 11 0.0011 0.095 14.1 4.3 1 23 405 428 405 428 0.94 7 11 0.0041 0.34 12.4 2.8 2 23 438 460 437 460 0.96 8 11 4.3e-06 0.00036 21.7 1.0 1 23 466 488 466 488 0.98 9 11 7.7e-05 0.0064 17.8 2.0 1 23 494 516 494 516 0.97 10 11 0.19 16 7.1 3.9 1 23 522 545 522 545 0.88 11 11 0.0011 0.094 14.1 0.7 2 23 551 573 550 573 0.97
Sequence Information
- Coding Sequence
- ATGCAATCCTTAGGAAAACTGGCGGAGTATAGATGGTTGAAGCTGCAACTGATTAACATCCTGCACCGCTCGACTCCATTCTGCGGAGTCTGCCTGGCGACGGAACAGCCTCTGTCCAGTGTAGATGATCAGATAGTAATTCCGTATTGGAAAAGTGCCTTTTGCAGTACATTGAGACAGTTTCTTGAGGCATTGTTCAGTGAAACGATACTCCAAAGTGAAAACATTTGTGAAGACTGCAGAGCGAGCACTGTTGATGCCTACCTCTTCATTTACAATACACGGCAAACTACTTGCATTCTGGAGGACTACATCCAGCAGATCAACAATGGAATTGATGAAATTAACCATATAGCTGATACCAACCTCACGGATTATTCAAACATGCAGTTGGTACTACAGGATCCTACTTTAAGTATACAGAGAGTAAAGCCCTTACAAATAGCATCAGATAGTGACATTGACTGTGAGGAATCTGTTCAGAGTTTAAAGACAGAGGATGCACAATACGACGAAATTTTCACACTCGCAAGTAGTATAATAGAACAGATTGAGACGAGCAATGAATATGAGACTGGTGATGAGGTTATACAACAGAAATATGTAACATGTAGTGATTGTGATGAAGATGAATGTGGTCATTAcaaatatttagtttcatatgaaaaacaaaaagcatcaggccagaaaaaaatatgcttcccaGAATGTAGCTACGAGTGCCGGCAAAAGGACTTATTTGTTGCTCATATTAATGAATTTCACATGCCAAGTATATTTTGCAAGCATTGCTCCAAGTCTCTACATTCTATAAAGGCATATAAATTACATCTAACTCATTTTCATAGCAAGATGTTAGTCTGTGAATATTGTgacagtaattttaaatttgatcATAATTTGTTGAAACACAAAGAATTCTGTAATATGGCGACAAAAGAGTTTCTTTGTGATGAATGTAGTGGATTTTTCACTTCTTATAGAAAATTGGAATATCACAAGCTGAACCACCATAACAAGAGTTCTAGTTTTCCATGTCCATCTTGTGATAAAGTGTTTGTGAAGCTCAGGCTCTTGAATGCACATAAAAGAGTCCATATAGAAGCTCAAATGAAACGACGAAAGCTCTATGAGTGTGGGATATGCCACAACACATACAAAACAGCAAAAGAAAGAAACCAACACAGATCAACACACAAACCAAATGAAAAACACAACTGCTCAAAATGTTCCATAACATTTGAAACACAAAGTGAGTTCATGCACCACATGTCCCAGGAACACTatgaaacttctaagccaaAGAACTTGAAATGTCCTCACTGTGATTATTCTACTTGTGGTAAAGAGTTTTTAGAGGCGCATGTCAATAGATTCCATTTGAAACTAAGTCCATATGCGTGCCCACAATGCCCAAAAAAATTTACCAATATGGTGAAACTCAGGACGCATTTAAAGACACACGATCCAGATAAGAAGCATAGTTGTGGAACGTGTGGAAAACTATTTTGCGGACCAGTGGCCCTTAGGAAGCACATGAGACTACATACGGGGGAAAAACCGTACAAGTGCGACTTTTGTGATAAGAGTTTCATCTGCGCTAGTACGAGAAACGATCACAGGGATAGAAAACATAAAGCAAAGTTAATACAATGTCCGTTATGTCCAAGTAAATTTCACACTTTGGGCATGTTACGagcacatataaaaaaataccactggAAACAGGAAGGCAAGTTTGATGTGACCAAAGTTGAGGGCTTGAATGAGGAACACTATGAGCTGTTCAGAGATAGGAGACTTGAAATTTTTTAG
- Protein Sequence
- MQSLGKLAEYRWLKLQLINILHRSTPFCGVCLATEQPLSSVDDQIVIPYWKSAFCSTLRQFLEALFSETILQSENICEDCRASTVDAYLFIYNTRQTTCILEDYIQQINNGIDEINHIADTNLTDYSNMQLVLQDPTLSIQRVKPLQIASDSDIDCEESVQSLKTEDAQYDEIFTLASSIIEQIETSNEYETGDEVIQQKYVTCSDCDEDECGHYKYLVSYEKQKASGQKKICFPECSYECRQKDLFVAHINEFHMPSIFCKHCSKSLHSIKAYKLHLTHFHSKMLVCEYCDSNFKFDHNLLKHKEFCNMATKEFLCDECSGFFTSYRKLEYHKLNHHNKSSSFPCPSCDKVFVKLRLLNAHKRVHIEAQMKRRKLYECGICHNTYKTAKERNQHRSTHKPNEKHNCSKCSITFETQSEFMHHMSQEHYETSKPKNLKCPHCDYSTCGKEFLEAHVNRFHLKLSPYACPQCPKKFTNMVKLRTHLKTHDPDKKHSCGTCGKLFCGPVALRKHMRLHTGEKPYKCDFCDKSFICASTRNDHRDRKHKAKLIQCPLCPSKFHTLGMLRAHIKKYHWKQEGKFDVTKVEGLNEEHYELFRDRRLEIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -