Basic Information

Insect: Yponomeuta evonymella
Gene Symbol: RIM101
Assembly: GCA_963969515.1
Location: OZ018364.1:4659479-4662032[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.018 1.5 10.3 0.2 5 23 365 383 364 383 0.97

2 11 0.0095 0.79 11.2 0.2 3 23 393 413 391 413 0.94

3 11 1.5e-07 1.3e-05 26.3 0.4 2 23 448 469 448 469 0.98

4 11 0.0038 0.32 12.4 2.4 1 23 475 497 475 497 0.99

5 11 0.069 5.8 8.5 2.2 2 20 502 520 501 522 0.92

6 11 0.00036 0.03 15.7 0.1 1 23 555 578 555 578 0.94

7 11 0.019 1.6 10.2 0.4 3 23 587 607 586 607 0.98

8 11 7.9e-05 0.0065 17.7 0.5 1 23 618 640 618 640 0.98

9 11 0.00018 0.015 16.6 4.7 1 23 646 668 646 668 0.97

10 11 0.0019 0.16 13.4 0.3 3 23 676 696 674 696 0.98

11 11 0.00024 0.02 16.2 2.8 1 23 702 725 702 725 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.018	1.5	10.3	0.2	5	23	365	383	364	383	0.97
2	11	0.0095	0.79	11.2	0.2	3	23	393	413	391	413	0.94
3	11	1.5e-07	1.3e-05	26.3	0.4	2	23	448	469	448	469	0.98
4	11	0.0038	0.32	12.4	2.4	1	23	475	497	475	497	0.99
5	11	0.069	5.8	8.5	2.2	2	20	502	520	501	522	0.92
6	11	0.00036	0.03	15.7	0.1	1	23	555	578	555	578	0.94
7	11	0.019	1.6	10.2	0.4	3	23	587	607	586	607	0.98
8	11	7.9e-05	0.0065	17.7	0.5	1	23	618	640	618	640	0.98
9	11	0.00018	0.015	16.6	4.7	1	23	646	668	646	668	0.97
10	11	0.0019	0.16	13.4	0.3	3	23	676	696	674	696	0.98
11	11	0.00024	0.02	16.2	2.8	1	23	702	725	702	725	0.96

Sequence Information

Coding Sequence: ATGGAGACGTGGTCTGGTTTATGCCGTTGTTGCCTTGCTACCGACTCTGAAATACAAATATTGGACGGCGAAGAGAAATTGAAACAGAAATTCCTCGATATAACTTCGATAGAGGTAAACCCTGAAGGGGATCTACCACACAACCTCTGCACAGAGTGTTATGATTTGTTAAACTCTGCATACGGTTTCCGTACACAGTGTCTCAATATGGACAAAGAACTCAATGCTCAGCTCGGGAAGTATCTCAGTCAAATTACTCCAAAAGAGGAAGTTGTTGAGGAATTACATGAAAAATTTGAAATGATACAAGAAAACCTTgacgaagaagaaaaaaagcatCTAGAGACTTTAATTAGAGCAGAGACAGGAGATTGTGTTGATGATTGTTTTTATGTCCTTGTAGTAGACCAGAATGACAATGAGGAAAATGAACTTATTTCTTTACAAGAAGAAGTAACAGTGAAAGAAGAACCAAGGCAAGTCAAAGCTGAGCCAGGGGAAACAATGCAGTCTACCATTAATGAACCAGATAACTTTGTTGAGAGTTCAATTGAGTCTTACATGATTACAGATAGAATCCCTACAAATGTTCCAGCTACAATCTTGGAGAATGAAGAAGAAAGTCAAGACAATGATGAGGAACAGTTCAATTATGATATGAACATTGATGAGAGTCCTGAACTTGGGGAAGAGAAATCACAGGATGGACAAAGATTTATTATAGACAGTTTTACGGACACTCAGGACAAAAGCAATGACAGCAATGTAGACATGATCATAACTGGTGACACACTGGAAGCATTACCCAACCCTAGCAgtaataaattagttaaattgATGACAACAACAAGGCGGGATGGTACTATAGTCATCAAAGGAGCCAATGGTGAGAATATAACTTATCTGACTGatatgatgaatgatgatgaaaatgatgAAGACGATCCCATGTCCCAAGAAGTTATACTGTGTGAAGGTGATGATAATACTCTACAGATTATAAAATGTGACGGTAATGAATTAATCATAGAATATGCTGATGATGGAGACATAGCAACTGTGTTACAACAGGAAGATGGCACTTTTTTGTGTGATTGCGGGCAAACCTTTGAAGACCTTACTGAGTATGAATTACATCAATCAACGCACAAAGCTATGCATAGAGGAGAACACCTCTGTAACCTATGTGGAAAAGGTTTTGAGTCCCCTGAGATACTCAAGGGCCATATGATACTCCACAATGTTACTGGCCTTCTAGTAAAGTGCCCTATATGTGAACAGCTTATAAAGAGAAACATACTGACACAGCACATAAAATTCATCCACACCAACATCAAACCCCAATGTGCCATTTGCAACAAAACATTTGCAAATCCCAATAATTTAAAACGCCATATGATGATTCACCAGGGCATCAAAGAGTATGAGTGTGATATATGTGCAAAACAGTTCCATCAGAAGATAACCATGCAAACACATAGATTGACTCATGTCAACCCATTATCATGCTGCCATTGTGATAGTGTTTTCACCACTACAACAGAACTACAAGAGCATAAAGACTCTGAACAATGCAGTAAATCAAAGCTGATCAAGGTAAAGGCGGAACTAATGAAGACTATCAAGCAAGAGGTTACAACCAATGATGGAAAACTAGTTGGTTTCGCTTGCTCTTTGTGCCAAAAGATGTTTTCTGTTGAATCTGCTTTAGAACAACACGTTGAAAGCATGCACATGATTAATCCCATGGAACTCCTGTGTTCTGAATGTGGAGAAGTAATGCCCTCAAAGAAAGATATGCAGCATCACCTAGCTACACACAAAATCGTCAAGTCAAAAAACGTGAAGCGTTTTGAATGCGAACAGTGTGGCAAAGGCTGTACGAGTCAAGCCATGTTACTAATGCACGAACGGGTCCATACCAATGAGAGACCATTTGCCTGCCAACTATGTACTCTAAggtttaaaacaaaaacacatttaCGAACACACCAACTCACACATACGAGGGAACGAAAGTTTGGTTGCTCAATTTGCATGAAATTCTTTGCCCTAAAAGGCAACTTGGTAGTCCATTTGCGAACTCACACTGGGGAAAGGCCCTATGTGTGCTCTCTGTGCCACGAAGCGTTTATAGACTCGAAATACCTCAAAAAACACAAGCTTCGAaagcattctattgaaaatgTCCCATGGAATGAATATCCATATTAA
Protein Sequence: METWSGLCRCCLATDSEIQILDGEEKLKQKFLDITSIEVNPEGDLPHNLCTECYDLLNSAYGFRTQCLNMDKELNAQLGKYLSQITPKEEVVEELHEKFEMIQENLDEEEKKHLETLIRAETGDCVDDCFYVLVVDQNDNEENELISLQEEVTVKEEPRQVKAEPGETMQSTINEPDNFVESSIESYMITDRIPTNVPATILENEEESQDNDEEQFNYDMNIDESPELGEEKSQDGQRFIIDSFTDTQDKSNDSNVDMIITGDTLEALPNPSSNKLVKLMTTTRRDGTIVIKGANGENITYLTDMMNDDENDEDDPMSQEVILCEGDDNTLQIIKCDGNELIIEYADDGDIATVLQQEDGTFLCDCGQTFEDLTEYELHQSTHKAMHRGEHLCNLCGKGFESPEILKGHMILHNVTGLLVKCPICEQLIKRNILTQHIKFIHTNIKPQCAICNKTFANPNNLKRHMMIHQGIKEYECDICAKQFHQKITMQTHRLTHVNPLSCCHCDSVFTTTTELQEHKDSEQCSKSKLIKVKAELMKTIKQEVTTNDGKLVGFACSLCQKMFSVESALEQHVESMHMINPMELLCSECGEVMPSKKDMQHHLATHKIVKSKNVKRFECEQCGKGCTSQAMLLMHERVHTNERPFACQLCTLRFKTKTHLRTHQLTHTRERKFGCSICMKFFALKGNLVVHLRTHTGERPYVCSLCHEAFIDSKYLKKHKLRKHSIENVPWNEYPY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01545126;
90% Identity: iTF_01546895;
80% Identity: -