Yevo029422.1
Basic Information
- Insect
- Yponomeuta evonymella
- Gene Symbol
- -
- Assembly
- GCA_963969515.1
- Location
- OZ018370.1:2051964-2053235[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.3 6e+02 2.1 0.0 2 22 18 38 17 40 0.81 2 11 0.0058 0.48 11.9 0.4 2 23 61 83 60 83 0.96 3 11 0.0032 0.27 12.7 0.9 1 23 127 150 127 150 0.92 4 11 0.00091 0.075 14.4 0.1 2 23 178 200 177 200 0.96 5 11 0.0023 0.19 13.1 0.4 1 23 222 247 222 247 0.97 6 11 0.00013 0.011 17.0 1.5 3 23 254 275 252 275 0.94 7 11 0.00094 0.078 14.4 1.7 1 23 280 303 280 303 0.96 8 11 0.00038 0.031 15.6 0.2 2 23 309 331 308 331 0.94 9 11 0.00015 0.013 16.8 2.2 2 23 336 358 335 358 0.96 10 11 8.7e-05 0.0072 17.6 0.4 2 23 365 386 364 386 0.96 11 11 0.0012 0.097 14.1 1.0 1 23 392 414 392 414 0.97
Sequence Information
- Coding Sequence
- ATGTCTACGAAAGGACTAGATCCAGAATTGAAACTTGATGTCTCTGACCTCAGTTGTGAAATATGCAATGAGTTATTACCAGATTTGAATGAAGTTTTAGTTCACATAGCGTTTAAACATAAGCTGAATTATGATAGACGTGTAGACTTGCAGCTAGATGCGTTTAGATTATCGGATTTATCGTGTCCAAATTGCGATGACACATTCACAGCCTTAAATTCTCTCTTTAATCATGTTAGAAAGACTCATTCACAAACGGATGAGACTAAACAGTCTGTGACACCGGCGGGTGGCGTTAAAGTGAAGAAGATTAGAAATAATCTAGCCTGCCTAATAAATATGTCAACGGCTTTGCCTTTCAAGTATTTCATGAACAAGTTCCGTTGCTTCTACTGCCCGAAAGATTTCATCGAATCCGATGATATGAAAGAGCACACGTTTAACGAACATCCTAAGTGCGATGTGAATCACAAAAGTATGAAGTTACGAGGCCTCCCTaacgtttttattaaaatagacATCAATGGTTTGAAATGTAATGTTTGCTCGGAACCATACAGTGACCTTGACGCTTTGATCGATCATCTTCTAAAGAAGCACAAAGCCTCGTACGACAAGACAGTTGATAGCAAAATACAAACGTTTAAACTTGTGAAGGATAGTTATCCTTGCACTTATTGTCCTGGCAAAGAACCCTTTCGATACTTCGGTCAGCTCTTAAAGCACATGAATAAGGAACATTCCAATAATAATCTTATCTGTCTCTTCTGTGGCATTTCGTTTAGATCCGATTCGCATTTACGCACGCACATATCACGCTACCACAGGCCTGAAGGCCACAAGTGTACTGATTGTGATTTGGAATTCGCAACGAAACTTCGACTTAAGAACCACAGAGCCAAAGCCCACGGAAAGAATATAGTGAAGTGCCCAGAGTGCCCCGAGAAGTTCCCCACAACTTACAACAAACAAAAGCACTTGATAAACGTCCACAATCTAGGTTCGAAGTGCAAATTTTGCGATCGCATGTTCGTTAGGAACTCCTTCATGCAGAACCACATAAGCCGTATGCACTTGAAAGAGAAGAAGGTAGAGTGCAATATCTGCAACAAGAGGTTTTTCGACAAGGTCGTGCTAAAGATACACATGGTCAAACACGTCGGGGACAGGAACTTTCAGTGTGACATCTGCGGGAAGAAATTCCTCTGGAAGAAGAACCTGAGAGGGCATATGACGTCACACGATAAGCAAACTAAAGCTCAGAAAATTTAA
- Protein Sequence
- MSTKGLDPELKLDVSDLSCEICNELLPDLNEVLVHIAFKHKLNYDRRVDLQLDAFRLSDLSCPNCDDTFTALNSLFNHVRKTHSQTDETKQSVTPAGGVKVKKIRNNLACLINMSTALPFKYFMNKFRCFYCPKDFIESDDMKEHTFNEHPKCDVNHKSMKLRGLPNVFIKIDINGLKCNVCSEPYSDLDALIDHLLKKHKASYDKTVDSKIQTFKLVKDSYPCTYCPGKEPFRYFGQLLKHMNKEHSNNNLICLFCGISFRSDSHLRTHISRYHRPEGHKCTDCDLEFATKLRLKNHRAKAHGKNIVKCPECPEKFPTTYNKQKHLINVHNLGSKCKFCDRMFVRNSFMQNHISRMHLKEKKVECNICNKRFFDKVVLKIHMVKHVGDRNFQCDICGKKFLWKKNLRGHMTSHDKQTKAQKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01545129;
- 90% Identity
- iTF_01545129;
- 80% Identity
- -