Yevo029419.1
Basic Information
- Insect
- Yponomeuta evonymella
- Gene Symbol
- -
- Assembly
- GCA_963969515.1
- Location
- OZ018370.1:2040730-2042786[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.019 1.6 10.2 1.8 1 23 41 63 41 63 0.99 2 16 0.01 0.84 11.1 0.2 2 23 92 114 91 114 0.94 3 16 0.0017 0.14 13.6 2.1 2 23 135 157 134 157 0.95 4 16 0.0011 0.093 14.1 4.0 1 23 162 185 162 185 0.95 5 16 0.0086 0.72 11.3 2.4 1 23 190 213 190 213 0.95 6 16 3.7 3.1e+02 3.0 0.1 2 23 216 238 216 238 0.90 7 16 0.055 4.6 8.8 0.5 2 22 245 265 244 265 0.94 8 16 0.088 7.3 8.1 0.3 1 23 317 340 317 340 0.89 9 16 0.32 27 6.4 0.3 3 23 369 390 367 390 0.91 10 16 0.04 3.4 9.2 0.6 3 23 414 436 412 436 0.96 11 16 0.00046 0.038 15.3 0.6 3 20 443 460 441 464 0.90 12 16 0.0037 0.31 12.5 0.8 1 23 469 492 469 492 0.97 13 16 0.00066 0.055 14.8 0.6 2 23 498 520 498 520 0.92 14 16 5.3e-05 0.0044 18.3 4.0 1 23 524 547 524 547 0.97 15 16 7.8e-05 0.0065 17.8 0.4 2 23 554 575 553 575 0.96 16 16 0.0064 0.53 11.7 1.1 1 23 581 603 581 603 0.96
Sequence Information
- Coding Sequence
- ATGGGACATGTTGTAGATGTTAAACCGCGGAATACCAAGGCGTCATCAACGAAACGACGCAAGAACCTACAAATACTGTTCAACAACACAACTATTATACCCTTCAAATGGCGCGGAAAATACAGATGCTTCTACTGTAGCGAAAACATAACGGAATACAATGACCTCCGCAAACACACTTTGACACACGGAAAATGCTCTCTAGAGGACCACTCCATAAAAGTCATCAAAGGTGGCCACAACATGGAGGTCAAAATTGATATCTCTGCCATTACCTGCGAGAAATGCAACGAGACATTTCCGTCCTTTGATGAGATTGTGAACCATTTGACTGTAAAACACAAGCTTCAGTACGACAGCACAATCGAAACAGTCCTTGAGCCTTACAAGCTTGATGACCTGACTTGCCATCTTTGCCAAGAAAAGTTCACATACTTTGGCTACCTAGTGTCCCATATGAATAATAACCACCCTAAAAACTGTCATATTTGCGACAAGTGCGACCAGAAGTTCAATAAACGCAGGGACCTCTTCTCCCACATTAAGAACTATCACAGAGAAGGCGGCTACCAGTGCGAGTTATGCCCTCACAAGTTCACAACGCTAAATATATTGAGGAAGCATCAGGAGAACAGGCATCTAAGAAGATGCGAGGTGTGCCAGCTGAAACTTCCGTCGGCAGCACTGAAGCGTCGCCACGTGGCTTTAGAACACCCAGACGATGGTACTCTACAGTGTCGTCAGTGTAGGAAACAACTGAGAACTCCTCAAGGCTTACGAATGCACGTCAGACGATGTCGCCCTGATACAACCGCAGGGTCCGCAGATTCGGACACCGATGCTGACGACGCTACACTGCGACGGCAAAGCGTCCAGCAGATTAAGCAGAATATACTAACGGTCATAAACATGTCCACAGCAATACCTTTCAGTTTTTACAAGAACAAGTTCAACTGCTTTTTCTGCTCCGAGGACTTTGCTGACTCCGACTCTATGAGGGAGCATACTGTATTAGCGCATCCAGTTTGCGATATCAAATCTAAATGTATTAAAAAGTGTAGGGAATCCAATGTCACTGTTAAGTTAGATATCTCTTCGTTAGCCTGCAAAGTGTGTTTCGAATCCATGCCCGATCTTGACCATCTAATCAATCATTTGACAGAAAAACACGGTGCGAACTATGACAAATCTTTAAGCTCATCTCTGCAACCCTACCGACTTATAAAAGACCACATGGCGTGCCCGCACTGCCCCAACGAGGTGTTCCGTTTTTTCGGCACGTTGCTGAAGCACATAAACTCCAATCACACCAACAACAACATCATTTGCGTGTACTGCGGCCAGACGTTCCGAAAGGAGCAAAACTTACGCGTCCATATATGGCGACATCACAAAGAAGGCCAGTTCAAATGTACGATCTGTGACGCTGAGTGCACGATGCCCTCCCGCCTTTACATGCACATGGCGAAAGTTCACGGTGTGAAAGCGGCTAAATGTAGCAAATGCGGCGAGAGGTTCGCCACGCAATATTTGCGTCAAAAACATTTGATCGACGCCCACAATTCGGGCCATAAGTGTTCCTATTGCGGCAAGCTCTTCGTCAGAAACTCGTTCATGAAAGATCACATTAGACGAACGCATTTGAAGGAGAAGAACGTGGAATGTTCCGTCTGTGGTATGAAGTTCTTCAATAATATCTTGTTGAGGCGTCACATGGTTAAGCATAGCGGAGAGAAGAATTTTCACTGCGACATCTGTGGCGAAAGGTTCTTTTGGCGCAAAGGGTTGGTTAGGCATATGGGACGGCATACAAAGCATCCTGCGGCGTCGATGTGA
- Protein Sequence
- MGHVVDVKPRNTKASSTKRRKNLQILFNNTTIIPFKWRGKYRCFYCSENITEYNDLRKHTLTHGKCSLEDHSIKVIKGGHNMEVKIDISAITCEKCNETFPSFDEIVNHLTVKHKLQYDSTIETVLEPYKLDDLTCHLCQEKFTYFGYLVSHMNNNHPKNCHICDKCDQKFNKRRDLFSHIKNYHREGGYQCELCPHKFTTLNILRKHQENRHLRRCEVCQLKLPSAALKRRHVALEHPDDGTLQCRQCRKQLRTPQGLRMHVRRCRPDTTAGSADSDTDADDATLRRQSVQQIKQNILTVINMSTAIPFSFYKNKFNCFFCSEDFADSDSMREHTVLAHPVCDIKSKCIKKCRESNVTVKLDISSLACKVCFESMPDLDHLINHLTEKHGANYDKSLSSSLQPYRLIKDHMACPHCPNEVFRFFGTLLKHINSNHTNNNIICVYCGQTFRKEQNLRVHIWRHHKEGQFKCTICDAECTMPSRLYMHMAKVHGVKAAKCSKCGERFATQYLRQKHLIDAHNSGHKCSYCGKLFVRNSFMKDHIRRTHLKEKNVECSVCGMKFFNNILLRRHMVKHSGEKNFHCDICGERFFWRKGLVRHMGRHTKHPAASM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -