Yevo028723.1
Basic Information
- Insect
- Yponomeuta evonymella
- Gene Symbol
- -
- Assembly
- GCA_963969515.1
- Location
- OZ018369.1:1397877-1425981[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 7.4e-05 0.0061 17.8 4.6 1 23 518 540 518 540 0.97 2 10 4.1e-05 0.0034 18.6 0.6 1 23 546 568 546 568 0.98 3 10 0.0038 0.31 12.5 1.9 1 23 575 599 575 599 0.98 4 10 6.2e-05 0.0052 18.1 0.1 1 23 605 627 605 627 0.93 5 10 0.0017 0.14 13.5 1.3 1 23 633 655 633 655 0.95 6 10 7.6e-06 0.00063 20.9 0.3 1 23 661 684 661 684 0.95 7 10 0.0032 0.27 12.7 8.3 1 23 690 713 690 713 0.95 8 10 0.00036 0.03 15.7 1.3 1 23 719 741 719 741 0.97 9 10 1.2e-05 0.001 20.3 0.5 1 23 747 769 747 769 0.97 10 10 0.021 1.7 10.1 0.1 1 22 775 796 775 799 0.91
Sequence Information
- Coding Sequence
- ATGTCTGCGGTGTgtttaatttgccattctgtGCCCACAGTCGCTGGATCTTATAGTAATAATTCTACGCTAGCGTCGGGCAAAACTCTTCAGCAAGTACTGACCGAAATCCTCGGAGAGACGGCTATAAGGCCGGGCATCAATACCACAATTTTATGCCAAACCTGCTACCCCAAATGCGTGGAGTACCACGGACTATCAGCCCGGCTAAACGAGCTGAAGACGTCGATGCGAGCGACCTTCTTCCGGGGTAAACCCCAAACGCCCACCAAAGGGGGTCCCAAGGCGGCGGGTCCCACTCCCGTCATATCCCTGCCCGCCTCAAAGTTGAAGCCTCTGCCATCGCAGTACGTGTTCCTTAACAAATCGGAGCTGAACACGGGAAAGTTGACCACGCCGGTGAAGCCTGCGAAACCGATCTCGAGCCCACCAAAAGCTGTCCCCAACGCCACAGTAACGTCCACAGCACCCAAACAAGACTTGGCCACAATAGTCCCCACCCAACCTCCGCTGAAACGGCTGACCATTGACAGCTTATTACTCTCCCAGCTGAGCGAATCCAAAGCGAACCTTACCGATGAAATAGCAAATATAACGGAGACAGCAAAATCTACGGCCCCGAGCTTAACACTAGACGCCAAGAGTTCAACTATGCTGAATTTTGATATGAACAAATTGCCAAAAGACTTTTTGGACACTGCGGTCTTGACGAAGACTGTGGTGGAGGAGAATAGCGTCAAGGTTGACGTGGAAAATAACGATGGACAGTCTATGGAGATTGATGAAGATTGCTTATGTACTATCAGTCAAGCCACTGCTGCTGAAGAGCCAACGAAAGAGTCCGAGGAAACAcagGAGAAGCCGTCGGAGTCAAACTCGGAACCCCAAGACGTGTTTGAGCTGAACCTCCTGTCTGAGCCGGGTGGCAGTCACAGCGGGGGCGAAGACTTCGTCGTCAAGAAGGTGGAGATTTTGGATGAACAGGACTGCGAAATTGAAGACAACACGTTACTGGTGGAAGGTGAGGACGGGGCGGTGTTCCGTGTGATGGCAGGACAAAAGTTCCTGTACGGAGGCAACGAGATCTCGCTCATCATCCCCGAAGATGACGACAATGACGCTCAAGACAACAATGATAATGCGGATTCCAACGACGAGTCTCAGATAGAGCTTCAGGTGTCCGGAGACGAGGAGACGGCCAACGCTATCATAGCTGCTGCAAGAGAGCAAGGAGGCGCGTTCATAAAAGTGCAGTCCGGCGAAATGTACAGGGTGAAATCGGTCAAGAGTCAAATGAAAGAGGAGGAAGAAGATACACAGGAATCGCCAAAACGATTTACGGATGTAATCAAGAAAGTAGGCAACGTGTATCGGTGCATCATTTGTGCGCTGGAGCCTAAAACTGAAGGTCCGCGGCGTTCCTACCAGACGCGAGAGATCGCGGCGAGACACGCGCGCCTCGATCACGGGATCGACGTCTCGCGCGATAAGGCAAGGGTTACATTTGCTGATGGAGGGGAATCGGCAAAACCCACAAGTAAGAAGTCCGGGCACGAGTGTAAGGAATGTCACAAGAGTTTCGGGTCCCGTAACCTGCTCCGGGAACACATGAATCAGCACACGGGCTGTCGGCCCTACGCCTGCGGCACCTGCGGGAAGACCTTCGCCTCCAAATACACGCGGCTGGCGCATCTCAAGACTCACGAGATGCGGCCGCGTCCGTTCAAGTGCACGAAGGAGGGCTGCGGCAAGGCTTTCCTCACGCTGCAAAACCTCACTCAGCACGAGCACACTCACGCGGGTATCAAGGACTTCGTGTGTCAGACTTGCGGCAAAGCGTTTGGCACGGCGCATAACCTAGAAGTCCACGGTGTAGTTCATTCAGGAGTCAAACCCTTCCTCTGCGGGATCTGTTGCAAGTCCTTCGCCAGGAAAGCCGAGATTCGGGACCACATACGCACACACACTGGCGAGCGGCCGTTCGCGTGCGACATCTGCAGCGCGACGTTCTCGCAGCGCTCCAACCTGCAGTCGCACGTCCGCGCGACTCACACGCAGGACAAGCGGCACGCGTGCCAACACTGCGACAAGCGGTTCAAGCGCCGGAGGCTGCTGGAGTACCACGTGAAGTCGTGCCACACGGGGGAGCGGCCGTTCAAGTGTACCGTCTGCAGCGCCACCTTCGTGTACCCCGAGCATTATAAGAAGCACGCGCTCATACACAGCGGGGAACGGCCTTACGTTTGCGAGGTGTGCGGCAAGTCGTTCAACTCCCGCGACAACCGCAACGCGCACCGCTTCGTGCACAGCGACAAGAAGCCGTACGAGTGCCTCGTCTGCGGCGCCGGCTACATGCGGAAGCCGCTGCTCTACGCGCACATGCACTCCAGCGGCCACATGACCGAGTCCATAGTGGTGAACCAACCGCGAGTGAGCCTCGAAGACCAGGAGAGCGAGACGACTCGAACCGCAGTCACGGTGAAAGAGTTTGGTATAACGCCCGACAAATAA
- Protein Sequence
- MSAVCLICHSVPTVAGSYSNNSTLASGKTLQQVLTEILGETAIRPGINTTILCQTCYPKCVEYHGLSARLNELKTSMRATFFRGKPQTPTKGGPKAAGPTPVISLPASKLKPLPSQYVFLNKSELNTGKLTTPVKPAKPISSPPKAVPNATVTSTAPKQDLATIVPTQPPLKRLTIDSLLLSQLSESKANLTDEIANITETAKSTAPSLTLDAKSSTMLNFDMNKLPKDFLDTAVLTKTVVEENSVKVDVENNDGQSMEIDEDCLCTISQATAAEEPTKESEETQEKPSESNSEPQDVFELNLLSEPGGSHSGGEDFVVKKVEILDEQDCEIEDNTLLVEGEDGAVFRVMAGQKFLYGGNEISLIIPEDDDNDAQDNNDNADSNDESQIELQVSGDEETANAIIAAAREQGGAFIKVQSGEMYRVKSVKSQMKEEEEDTQESPKRFTDVIKKVGNVYRCIICALEPKTEGPRRSYQTREIAARHARLDHGIDVSRDKARVTFADGGESAKPTSKKSGHECKECHKSFGSRNLLREHMNQHTGCRPYACGTCGKTFASKYTRLAHLKTHEMRPRPFKCTKEGCGKAFLTLQNLTQHEHTHAGIKDFVCQTCGKAFGTAHNLEVHGVVHSGVKPFLCGICCKSFARKAEIRDHIRTHTGERPFACDICSATFSQRSNLQSHVRATHTQDKRHACQHCDKRFKRRRLLEYHVKSCHTGERPFKCTVCSATFVYPEHYKKHALIHSGERPYVCEVCGKSFNSRDNRNAHRFVHSDKKPYECLVCGAGYMRKPLLYAHMHSSGHMTESIVVNQPRVSLEDQESETTRTAVTVKEFGITPDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01545990;
- 90% Identity
- -
- 80% Identity
- -