Yevo029374.1
Basic Information
- Insect
- Yponomeuta evonymella
- Gene Symbol
- -
- Assembly
- GCA_963969515.1
- Location
- OZ018370.1:1721671-1733119[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.78 65 5.2 2.4 3 21 2 20 1 23 0.94 2 30 0.097 8.1 8.0 0.7 1 23 91 113 91 113 0.92 3 30 0.0084 0.7 11.4 0.3 1 23 117 140 117 140 0.91 4 30 0.046 3.8 9.0 0.6 3 21 146 164 145 165 0.94 5 30 0.036 3 9.4 0.9 1 23 172 195 172 195 0.93 6 30 0.12 9.6 7.8 2.0 1 23 202 225 202 225 0.88 7 30 0.62 51 5.5 1.1 2 20 267 285 266 289 0.93 8 30 0.35 29 6.3 0.3 1 23 356 378 356 378 0.93 9 30 0.0069 0.57 11.6 0.5 3 23 384 405 383 405 0.94 10 30 0.017 1.4 10.4 1.3 1 21 409 429 409 430 0.96 11 30 0.00078 0.065 14.6 2.2 1 23 437 460 437 460 0.95 12 30 0.0054 0.45 12.0 1.3 1 23 467 490 467 490 0.97 13 30 0.005 0.42 12.1 0.3 2 17 495 510 494 511 0.87 14 30 2.2 1.8e+02 3.8 2.0 2 20 526 544 525 548 0.93 15 30 0.003 0.25 12.8 0.5 1 23 616 638 616 638 0.92 16 30 6.8e-05 0.0056 18.0 0.5 1 23 642 665 642 665 0.94 17 30 0.037 3.1 9.3 0.6 1 21 669 689 669 690 0.95 18 30 1.1 90 4.7 0.4 1 23 697 720 697 720 0.88 19 30 0.1 8.5 7.9 2.2 1 23 727 750 727 750 0.91 20 30 3.7e-05 0.003 18.8 1.1 2 23 755 776 754 776 0.94 21 30 0.019 1.6 10.2 2.1 2 23 814 836 813 836 0.97 22 30 0.037 3.1 9.3 0.5 2 23 862 884 861 884 0.91 23 30 0.032 2.7 9.5 1.2 3 23 908 928 906 928 0.96 24 30 7.1e-06 0.00059 21.0 0.8 1 23 932 955 932 955 0.94 25 30 0.018 1.5 10.3 0.8 1 21 960 980 960 981 0.96 26 30 0.0044 0.37 12.2 1.0 1 23 988 1011 988 1011 0.93 27 30 0.012 0.97 10.9 4.6 1 23 1018 1041 1018 1041 0.94 28 30 0.023 1.9 10.0 0.3 2 20 1047 1065 1046 1068 0.90 29 30 7.4e-05 0.0061 17.8 0.3 1 20 1074 1093 1074 1096 0.94 30 30 0.0053 0.44 12.0 4.6 1 23 1102 1124 1102 1125 0.94
Sequence Information
- Coding Sequence
- ATGTGCTATTTCTGTTCGAGCTCATTTGAAGATCCGGAACAATTCAGAATGCATATGAACTGCCAGCATAATACCATCGATCGATCCACTCTTTTGAGTAACGAGGGCGTGATCATACGTGTCGACATCACTCGTCTTTCGTGTCGGTTGTGTACGACTCTGCACGACTCGCTAGATTTGCTAGCTGAGCATCTGAAAACTCAGCACCAGCTTGATATAAACACGAAAGCCACGTTGAGTCTCGTCCCCTTAAAGTTAGAAAAAGACAGATACGCTTGTCTTACTTGTAGAAAAAAATTCACTGGTTATATAGAATTATCGCGGCATTCTGGTTCACATCTCCTCAGATTCATGTGCCACATCTGCGGGAAAAACTTTCAAGCGATCAATGGCTTGAAAGAACATTTAATTTTAGGACATACAACGGCGCCCATGTGCCGAGTTTGCCGAAAAACATTCCCGACTAAAGAGGCGAAGATGAAACATACGCGCGAGAGCATGCCCTGCATGACATTCGCGTGCAAAGAGTGCAATTTAAGATTCCCTTATTGGGAACTTAGAGATAAACATATGCACGAGGAGCATGGGCATGAGAAGCTGACATATCCTTGCAAAGAGTGTGGTGTGGTTTTCGACCGAAGATGTGCCCGTTACCAACATTTCAAGGCGACACACACAGAAGACTTCAAATGGGACTCGCCTCAGCCGCATGCGTTGGACAAAGCATGGGAAAGTTCGGAAGTGATTCTAAAGTACTCTACAGCGTGTCCGTTCAGCCTGATCGGGACTAATGATATCAAGTGCTATTTCTGTCCCAGTTCCTTTGAAGACCCGGTACAATTCAGAATGCACGTCAATTGCGAACACAGTACCGTCGATCGCTCAATTGTATTGCAAAATGAGCGCACGATTGTAACTGTCGACGTTACTAACCTCCTATGTCGGATGTGTTTGACGCCGCACGACACGTTAGAATTGCTAGCGGATCATTTATCACAACACGATATCGTTATAGACACGAGTGACAAGTTGAGGCTCGTTCCGTTGAAATTAGAGAAGGATAGGTTCGTTTGCGTTACATGCGGTAATTTGTTCTCGGGTTACAAAGAGTTGTCAAGGCATTCGAGCGCGCACATGCTTGGATTATTATGTCACGTTTGTGGCAAAGACTTCCAAAGTGTAAAACTTTTGAAAGAGCACTTAATATTGGCTCATTCCGCTGGATACGTGTGCAGACACTGTAAACTTACGTTCCCAACTAAGGAGACGAAAATGCAACACCTTCGTGAGAACCCGGTTTGCAGGACTCACCAATGCAAGGTGTGCAATGAACGATTTACCTCCTGGACTTTGAAAGAAAAGCACATGGTTAAGGAGCACGGGCAAGCAAAGCCGACGTTTTCTTGCGACGAGTGTGGGGAGGTCTTCGAAGAACGGCACAAACGTGACCGTCACATTAAAATGACGCACGCCGATGATTTAAAATGCCATATTTGCGATAAAAAGTTCCCTCAAAAGCAACTGTTAATGCACTCCACAGCGTGTCCGTTCAGGCTGGTCGGGACTAAAGATATCAAGTGCTATTTCTGTACCAGCTCCTTTGAAGACCCGGTACAATTCAGAATGCACGTCAACTGCCAACATAGTACCGTAGATCGGTCGATTGTGTTGCGGAACGAACGCATGATCGTACGTGTCGACATCACCCACCTTCTGTGTCGGCTGTGCATGACTCCGCATGACTCTTTAGAAATGCTAGTGGAGCATTTGAAATCACAGCACGAACTTGATATCGACACGAACGTCAACTTGAGGTTGGTTCCGTTAAAGCTAGAGAAGGACAGATTCGCTTGCGTTACGTGCGGTAAAAAGTTCACTGGCTACAAAGAGTTATCGAGGCATTCAGGCGTGCATTTTCTTAGATTCATATGCCATATTTGCGGCAAAAACTTCCAAACGCCAAACGGtttgaaagaacacttaatactaAGTCACTCCGCGGGGCACGTGTGCAGACTATGTAAACTTACGTTCCCAACTAAGGAAGCGAAAAGACAACACATTCGTGAGAATCAAGCCTGCATGACTTTCCTCTGCAAGGCATGCAATGAAAGATTTCCCTTCTGGGACTTGAGAGACAAACATATGGTTGAGAAGCACGGCCAAGCCAAATCGACCTATCCTTGCAAAGAGTGTGGGATGATCTTTGAGAAACGACATAACCGTTACCTTCATTTCAAAGCGACTCACACTCAGGATTTGAAATGCCAGATTTGCGACAAAACGTTCTCTCAAAAACAACAGTTGATAGAACACGGTTTCAAGCACTCTGGCGAGAGACCTTACAAATACGACACGTTAGTGACCACACGACGGAACGCTGCGATAATATTGACCAACACCACGGCTTACCCCTTCAGGCTCCCTGATAGCGAGATGCAGTGCGTCTACTGCTGTACTAGTTTCGAAAACCCACTAGATTTTCGCACACACATGCGCACCGACCACCCCTCCTATAACATGGATACAGCGTTCGCACATTGCAAATACGAAAGCTACGTAAAAGCGGACTGCACTGAGCTCCAGTGTAAAATATGCACTAAAATGTTCGATAAATTAGAAGATATTGCGATACACTTGCACGAATCTCACGATAAGAAAATTAACTTGAACTTCGAACTAGGAATCCTTCCGTTTCGGCTAGAGAACGATAAGATGGATTGCTACTTTTGCTCGAAAAATTTCTCCGGAATACGTCAATTGAGTAGGCACTTGTCATCGCATTATATGAAGTTCACGTGCGAATTATGCGGCAAATCGTACATTTCCAAAACTTCTCTCAGGCAACACATGCTATTCGGACACAGGGGGGATACGTACATTTGCAGAAAATGCAAggagcgattccaatcgactGATGCGTACAAGCAACATATGAACGAGTCCACTGCCTGCTGGATGCACGTGTGCAACATATGCGGAGAGCGATTCAAAGGTTGGCATCTGAAAGAAACGCATCTCATGGACGTTCACGGACGCCCCAGCAAAACATACCGGTGTAGGGAATGCGACAAAGTCTGTGACTCCAGGAAAACTTTACGTATCCATTTCAAATTTTCTCACACCGACGACGCCTTAGTTTGTTCTTACTGCGGCCAAAAGTTCGATTCTAAGAGATTTTTAGACGATCACTTGCCGGTGCATACCCAGGAGAAGCTTTTCACGTGTTCTGTATGCGCCAAACCCTTTGCCAGGAAGAAGAATTTAGAACAACACATGTGGATACACAGGGAAGAGAAGAGGTTTCAATGCATTACTTGTAATAAGAAATTTAATCAGCGAGTCAGTTGGAGAACACATATGAAATCACACCATCCTGAATACGGAGTTGTGTGA
- Protein Sequence
- MCYFCSSSFEDPEQFRMHMNCQHNTIDRSTLLSNEGVIIRVDITRLSCRLCTTLHDSLDLLAEHLKTQHQLDINTKATLSLVPLKLEKDRYACLTCRKKFTGYIELSRHSGSHLLRFMCHICGKNFQAINGLKEHLILGHTTAPMCRVCRKTFPTKEAKMKHTRESMPCMTFACKECNLRFPYWELRDKHMHEEHGHEKLTYPCKECGVVFDRRCARYQHFKATHTEDFKWDSPQPHALDKAWESSEVILKYSTACPFSLIGTNDIKCYFCPSSFEDPVQFRMHVNCEHSTVDRSIVLQNERTIVTVDVTNLLCRMCLTPHDTLELLADHLSQHDIVIDTSDKLRLVPLKLEKDRFVCVTCGNLFSGYKELSRHSSAHMLGLLCHVCGKDFQSVKLLKEHLILAHSAGYVCRHCKLTFPTKETKMQHLRENPVCRTHQCKVCNERFTSWTLKEKHMVKEHGQAKPTFSCDECGEVFEERHKRDRHIKMTHADDLKCHICDKKFPQKQLLMHSTACPFRLVGTKDIKCYFCTSSFEDPVQFRMHVNCQHSTVDRSIVLRNERMIVRVDITHLLCRLCMTPHDSLEMLVEHLKSQHELDIDTNVNLRLVPLKLEKDRFACVTCGKKFTGYKELSRHSGVHFLRFICHICGKNFQTPNGLKEHLILSHSAGHVCRLCKLTFPTKEAKRQHIRENQACMTFLCKACNERFPFWDLRDKHMVEKHGQAKSTYPCKECGMIFEKRHNRYLHFKATHTQDLKCQICDKTFSQKQQLIEHGFKHSGERPYKYDTLVTTRRNAAIILTNTTAYPFRLPDSEMQCVYCCTSFENPLDFRTHMRTDHPSYNMDTAFAHCKYESYVKADCTELQCKICTKMFDKLEDIAIHLHESHDKKINLNFELGILPFRLENDKMDCYFCSKNFSGIRQLSRHLSSHYMKFTCELCGKSYISKTSLRQHMLFGHRGDTYICRKCKERFQSTDAYKQHMNESTACWMHVCNICGERFKGWHLKETHLMDVHGRPSKTYRCRECDKVCDSRKTLRIHFKFSHTDDALVCSYCGQKFDSKRFLDDHLPVHTQEKLFTCSVCAKPFARKKNLEQHMWIHREEKRFQCITCNKKFNQRVSWRTHMKSHHPEYGVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -