Ycag003875.1
Basic Information
- Insect
- Yponomeuta cagnagella
- Gene Symbol
- -
- Assembly
- GCA_947310995.1
- Location
- OX371296.1:5435700-5459406[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.2 1.6e+02 3.6 0.5 2 23 287 308 286 308 0.95 2 12 4.5 3.2e+02 2.6 8.2 1 23 315 338 315 338 0.90 3 12 2.5e-05 0.0018 19.1 6.4 1 23 369 392 369 392 0.97 4 12 0.04 2.9 9.1 0.0 2 23 397 419 396 419 0.91 5 12 0.018 1.3 10.1 0.1 3 22 433 452 432 456 0.93 6 12 0.0097 0.69 11.0 0.2 2 23 514 536 513 536 0.95 7 12 6.3 4.5e+02 2.2 0.0 3 12 587 596 585 601 0.83 8 12 5.2 3.7e+02 2.4 0.1 3 12 618 627 616 634 0.78 9 12 0.024 1.7 9.8 0.9 3 23 649 668 647 668 0.94 10 12 5.1e-05 0.0036 18.2 3.1 1 23 674 696 674 696 0.98 11 12 0.0075 0.53 11.4 1.1 1 23 701 724 701 724 0.95 12 12 0.016 1.1 10.3 5.1 1 23 730 753 730 753 0.93
Sequence Information
- Coding Sequence
- ATGTTTCGCAAGTGCTGTCTTCCTCAGTCCAAAAGTATACGACAGGACGTAAAGTTGCATAGATTTCCCGTGACCAGGGAAACTCAGAGAAAATGGTTACAGTGCATAAATAGTGAGAAGACAAGGCTGAGTCTTACAGACGATGAAGTTTGCAAATCTTATGTGTGTCATAAACATTTCGAGAAGAAATTTGTAAACCTGCACTCCAACCATCTCAAGGTTGGAGCTTACCCTTGGCTGACCCTAGCGGAAATACAAAGAGTGGACAGAAATCAGCTGAGGCTGACTCACAACTTGCACTACCGGCGCTCGGTGCCAAATCATTTTGACAGACTTTACATTCACGGCGACACCGAGCCGGCCGTCGAGAGCGCAATGAGTGACAAAGTGAAATTGGAACTGGAGGTGGTTCCTCTGAAAAGCGTAGATATTGTCAACGACACAGACACCTTTGCTGACACTATAGATGACAAACAACGAGACAATTTCCATGACGAACATACCGCAGCAGATGATAATAGTAATTCTGACGAAGAGCTTAATATACCAATAAAATCTCTCATGAAAGTCAAAACGAGAAGTAAAGCGAAACCCACTAAAGTTACTAAAGAAAAGAAATCAGTTGCGAGCAAAAAAGTAAAAGTCACAAAGGCGAGTAAAGACGCTACAGAAACTAAAAGCAGAGCAAAGAATAAATCAGCACCACCGAAAGTACCCAAAACGAAGAAGTTAAAAGACACAGAGACTGAAAAGAAAATGGAGGAATACTTCACAGTGACAGTGTTCAAAACTCTAGAGGAGAAATTGGAGGAAATGCAGAAGAGGAAGCTGTATTCGTCCTACGTGAACGCGCCCTTGAAGTGCGAGTTTTGCTTCCAAGGGTACTTGGATAACGAGACGTATGATGTCCACATGCAGAAACATACAGACAAATACGGCGAGTACCTCTGCGAGGTGTGTCACTTCCGCTGCCCCAGTAAATCCCGGCTCCGGCACCACAAGTATTACCGACACTCGCGGAAGTACTTCTGCAGGATGTGTCGCTTCGAGTCGCACGACAAGTACCGAGCGACGTTACACATGCGATTTCACGAGGGCAAGACCTACAAATGCACACACTGCGACAAAGTATTCAATCACCTGGTGAATCTGCACAACCACTTACGGGCGAAACATCCGTCGGACAGCGTGTGTCCGATGTGTGGATACTCGTTCCTGGGCGCGCGCGGTTTAGCCACGCACATGGCGCTACTGCACGGACACCAGAGAGACCAGGTGCCCGAGCACGGGCCGCTGTGCGCGGAGTGTGACATCCGGTTCGCTTCTGAAGAGGCGCTGCAATTGCATCTCAAGGTGTCCTCTAAACACGGGAAGAGCGAAGAGAACCTGAAGAAGCGCGACTACCACGCCCTCCATCGGCTGCTCAAAAGCAAAATCCCGCGCGCGCGCCGCGAACGCGCTAAGCCCATCGTCCGCAAGCGAGACGGCATCCGGCTCGAAAAAAGGCCCATCAAGCTGACTACCTTCGAGGATCCGGTGCCCTGCGAAAAGTGCGGCATTTCGATCAACTCCCCGTCTGAGTACCACCAGCACTGGATGCGGTCGCATCGACACGAGCGACGCGCCTGGTTCCCCACTGACTCGCATCCGCATCTGTGCGAGCTATGCGGGAAGATGCTGCGGATTGACTCGGTACAAGATTACGGCACCAACAGTACTGGATGCGCCTGGTTCCCCACCGAATCGTATCCGCATCTGTGCGAGCTATGCGGGAAGATGCTGCGGTACTGGATGCGGGCGCACCGATACGAGCGCCGCGCCTGGTTCCCCACCGAATCGCATCCGCATCTGTGCGAGCTATGCGGGAAGATGCTGCGGTACTGGATGCGGGCGCATCGACGCGAGCGCCGCGCCTGGTTCCTCACCGAATTGCATCCGCATCTGTGCGAGCTATGCGGGAAGATGCTGCGGAACAACGCCCTCAAGGATCACATGCTGGAGCACACAGAGGGGATCACGTTCCGGTGCGAGACATGCGGCAAACGGTTCAGCAAACGGTTCAACATGCGACTGCACAGCCGAGTGCATTTGGGCGAGAGGTATCCCTGCACAGTTTGTGGGAAACTCTTCAACCATATGGGCAACAGAGATCGCCATGTCAAATATGTACACACGGAGTCGAAAGACTTCAAGTGCGAGTTTTGCGGCAAATGCTTCAAGAACGACGGAGCACGGAAACTACATACAAACCACGTGCATCTGCGAAAACCTTACCCGAAGCGTAACCGGAACAGAGACGGCAACAGGCCGGACAGGAGAGAGAAAGGGACAGAGGAGGCTTTCCGGGGCGAGAACGCCGAGGTGTGGGAGTGA
- Protein Sequence
- MFRKCCLPQSKSIRQDVKLHRFPVTRETQRKWLQCINSEKTRLSLTDDEVCKSYVCHKHFEKKFVNLHSNHLKVGAYPWLTLAEIQRVDRNQLRLTHNLHYRRSVPNHFDRLYIHGDTEPAVESAMSDKVKLELEVVPLKSVDIVNDTDTFADTIDDKQRDNFHDEHTAADDNSNSDEELNIPIKSLMKVKTRSKAKPTKVTKEKKSVASKKVKVTKASKDATETKSRAKNKSAPPKVPKTKKLKDTETEKKMEEYFTVTVFKTLEEKLEEMQKRKLYSSYVNAPLKCEFCFQGYLDNETYDVHMQKHTDKYGEYLCEVCHFRCPSKSRLRHHKYYRHSRKYFCRMCRFESHDKYRATLHMRFHEGKTYKCTHCDKVFNHLVNLHNHLRAKHPSDSVCPMCGYSFLGARGLATHMALLHGHQRDQVPEHGPLCAECDIRFASEEALQLHLKVSSKHGKSEENLKKRDYHALHRLLKSKIPRARRERAKPIVRKRDGIRLEKRPIKLTTFEDPVPCEKCGISINSPSEYHQHWMRSHRHERRAWFPTDSHPHLCELCGKMLRIDSVQDYGTNSTGCAWFPTESYPHLCELCGKMLRYWMRAHRYERRAWFPTESHPHLCELCGKMLRYWMRAHRRERRAWFLTELHPHLCELCGKMLRNNALKDHMLEHTEGITFRCETCGKRFSKRFNMRLHSRVHLGERYPCTVCGKLFNHMGNRDRHVKYVHTESKDFKCEFCGKCFKNDGARKLHTNHVHLRKPYPKRNRNRDGNRPDRREKGTEEAFRGENAEVWE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01544479;
- 90% Identity
- iTF_01543041;
- 80% Identity
- iTF_01543041;