Ycag013399.1
Basic Information
- Insect
- Yponomeuta cagnagella
- Gene Symbol
- ZBTB41
- Assembly
- GCA_947310995.1
- Location
- OX371295.1:2297341-2299687[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0016 0.11 13.5 0.2 1 20 170 189 170 190 0.90 2 11 9.1 6.5e+02 1.7 0.2 3 23 199 219 198 219 0.86 3 11 7.3 5.2e+02 2.0 0.6 1 23 224 247 224 247 0.82 4 11 0.0013 0.094 13.8 0.9 1 19 252 270 252 274 0.94 5 11 0.0029 0.2 12.7 2.6 2 21 278 297 277 298 0.94 6 11 0.0016 0.11 13.5 2.4 2 23 342 364 341 364 0.94 7 11 0.87 62 4.9 0.8 3 23 372 391 371 391 0.81 8 11 0.00059 0.042 14.8 1.1 1 23 396 418 396 418 0.98 9 11 0.001 0.074 14.1 1.3 1 23 424 447 424 447 0.98 10 11 0.0012 0.083 13.9 1.7 1 23 456 479 456 479 0.97 11 11 0.012 0.84 10.7 4.4 1 23 489 511 489 511 0.98
Sequence Information
- Coding Sequence
- ATGAGTCGTCAAGTGGACGTGAAGGCTCTGGTATCGCACATAGTGCGTGGAGACGGAACTGACAAATGCCGAATTTGCATGGGCGACACCTCTGAAGGCCAAGTCTTCTTAGGTGATACTGTTCTTTTGGATGGCAACCGGCCTGTGACCCTAGCGGAATTACTGGAAACCATCACTGGAGTCGAGGTGGCACTGGAGGATGACTTGCCAGCGGGGCTTTGCTCCATCTGTACTGTAGCCGCCATGGAGGCTGGTAACTCTATAACCTTCTTTCGGGACGCAATCAACAGCTGGGCACACACTCTCCAGCTTCTTGCAAACTTGCCAGGTCCAGAAGACTTTCCTAAACAGAACACTACACTGAAAATAGTTCTGTGTCACAACGAACTCATTGTAGAATCCTATCCTAGCGAGCCCATGGCACCTAAATTAGAATATGAAGAGGATGTTTATGAGGAATCAAAGCCTTTGAAGAAAACTAAAAGAAAGAATATGGCGAAAGGGGAATTTAATTGTCCAGACTGTGGGAAATCCTTTCAGTATGTAAAAGGCTTGTATTTGCATTTGCTCCCGTCTTCTGATCTGAAGCGGGCATGTAAAAAGTGCAGTGCAGTCATGAGTCGAGATGAATTGATCCTTCATTTGAGTAAAGTTCATGGAGTGAGGGTATTCCCTTGCAAGAAATGCCCAGCAATCATGGACTCGCTGGACAAACGTTTGCATCACATTATCAAGTCGCACAGCACTGGGGCACACAGCTGTGGCGACTGTGGTGTCACTTTCAAGTCTTTACATGCTCTGAACTCCCACTCTCCTATCCACAGCCTAAAAACATGCCCCAACTGCGATAAACTCTTCCGCAACCAGTCCTGCTATGTACACCATGTAAAGATATGCTGCGATTTAGACAGCACAAGGGAAGACACACACAGGACCAAAACAAAAGTTAGCATTGAAGTGAAGAATATGAACAGCGAGAGAAAAGTCAAGGTGGGATTGCGAGGAAGCGCCGACACGGTGTGCTACTGTGATTATTGTGGCAAGAAGTTCAGCGGAAAGAAATTTGTAGCAGCACACATACACATAGTGCACACTAAACTAACGCATAGGCCCTGTCCGCACTGTGGCAAGTTGCTGGCGTCTGCTCACATGGGGGCGCACATAAAACGTCACGAGACCCAGACGTTTACATGTGAACACTGCGGCATAGTCTTACGGAGCAAGTTAGGCTATCAGCAACATCTGAGGTTGCACACGGGAGAGCTCCCTTACAAGTGTCTGCAATGTGGTGAAAGGTTCTCAGCCTCGTCACGACGCTCGAGCCACATGCGCAAAGTGCACAAAACTAAAGAGATGGTCCTTAAACATAGATGCGAATTCTGTCCCGCAAAATTCAACCTGCCTTACAAGTTGCGAAAGCATTTGGCCACAAGTCATCCGGCGGAGTCTGAGAATAAGCCAGAGTTTCAGTGTAACATTTGTTTTGAGAAATTTGGGAGCTGCCGGGGTTTGGTGCACCACGGTAGGAAGCATCAGCAGACCAAAGTGCTACTCAGTGACCAAAGTGAAGTAGTTATAGAGGAAGAAAGTTGA
- Protein Sequence
- MSRQVDVKALVSHIVRGDGTDKCRICMGDTSEGQVFLGDTVLLDGNRPVTLAELLETITGVEVALEDDLPAGLCSICTVAAMEAGNSITFFRDAINSWAHTLQLLANLPGPEDFPKQNTTLKIVLCHNELIVESYPSEPMAPKLEYEEDVYEESKPLKKTKRKNMAKGEFNCPDCGKSFQYVKGLYLHLLPSSDLKRACKKCSAVMSRDELILHLSKVHGVRVFPCKKCPAIMDSLDKRLHHIIKSHSTGAHSCGDCGVTFKSLHALNSHSPIHSLKTCPNCDKLFRNQSCYVHHVKICCDLDSTREDTHRTKTKVSIEVKNMNSERKVKVGLRGSADTVCYCDYCGKKFSGKKFVAAHIHIVHTKLTHRPCPHCGKLLASAHMGAHIKRHETQTFTCEHCGIVLRSKLGYQQHLRLHTGELPYKCLQCGERFSASSRRSSHMRKVHKTKEMVLKHRCEFCPAKFNLPYKLRKHLATSHPAESENKPEFQCNICFEKFGSCRGLVHHGRKHQQTKVLLSDQSEVVIEEES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01546082; iTF_01545261; iTF_01544366;
- 90% Identity
- iTF_01546082; iTF_01545261; iTF_01544366;
- 80% Identity
- -