Ycag003942.1
Basic Information
- Insect
- Yponomeuta cagnagella
- Gene Symbol
- -
- Assembly
- GCA_947310995.1
- Location
- OX371296.1:6648225-6667462[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0018 0.13 13.3 0.3 2 23 132 153 131 153 0.97 2 13 0.044 3.1 9.0 8.2 2 23 161 183 160 183 0.93 3 13 0.00018 0.013 16.5 4.3 1 23 190 213 190 213 0.94 4 13 2.8e-05 0.002 19.0 5.0 1 23 223 245 223 245 0.98 5 13 0.003 0.22 12.6 0.1 1 23 285 308 285 308 0.95 6 13 0.051 3.6 8.8 1.5 1 23 339 362 339 362 0.97 7 13 1.9 1.4e+02 3.8 0.4 1 23 366 389 366 389 0.90 8 13 0.0025 0.18 12.8 0.0 3 23 438 458 437 458 0.97 9 13 0.0095 0.68 11.1 0.2 3 23 471 492 469 492 0.96 10 13 1.4e-05 0.001 19.9 2.1 2 23 502 523 501 523 0.97 11 13 0.0047 0.34 12.0 0.1 1 23 529 553 529 553 0.90 12 13 2.7e-07 2e-05 25.3 0.3 1 23 559 581 559 581 0.98 13 13 5.1e-06 0.00036 21.3 2.0 3 23 589 610 587 610 0.97
Sequence Information
- Coding Sequence
- ATGTATGGTCTCGGCCTTCGGCCTCGGCCTTCGGCCTCGGCCTGGATGGAGCTCGGCCTTCGGCCTCGCCGCGGCGGGGTTCTTCGTGCCCGCTTCGCGGAGCTCGGCCTCCGGCCTCGCAAATTTGTCCCATCTGGCTTTTGCGTTGTTGCTTATTCGCCGAAAATGTATAGTCTCGGCCATCGGCCTCGGCCTGAACGGAGCTCGGCCTTCGGCCTCGCCGAGGCGATATTCCTAGGGCCCGCTTCGCGGGGCTCGGCCTTCGGCCTCGCAAGTTTGTCCCACCTGGCTTTTGCGTTGTTGCTTGTTCGCCGGAAAATGTATGGCCTCGGCCTGGACGGAGCTCGGCCTTCGGCCTCGCCGCGGCGAGAACGTCCATACGCCGTTGGAGTCTCGTGCCCCGAGTGCATGAGAGAGTTCAAAAACGACCAGTACCTGAAAGAGCACATGCAGATTCACAACGGTCTGGAGATGAAGGTGTCGTGCGAGCTTTGCAACAAAATGTTCCACTCGCAACACTGTCTGAAAAAGCACAAAAAGTTCGTGCACCCGGAGGGCAAACAGAAACATCAGTGCGTCCACTGTAACAAGGAATTCGCTCACGAATATTACCTGAGACGCCACATCAGCGGCGTCCACATGAAAACGGACGAGAGTGAGTGGCAGCACAAGTGCGACCGATGCGGGAAGAAGTTCAAGGTCCTCAAGTACCTGAAGAATCATATGATGAAACATGCAGCAGACCTGAGACGCCACATCGACGCCGTCAACGTGGAAACGGACAAGAGCGTGTGGCCACACAAGTTGACCCAATGCGGGAAAGAAGTTCAAGGTCCTGAAAGCCGCGGCGCGTTTCGATGCGGCGTGTGTTCGCTCCGGTACGCGTCGGCGCGTCAGTTGCGCGCGCACGAGATCTCGGCGCATGCGCGCCAGTACCACTGCCTCACCTGCGCGCACCGGTCGCACACCGCGCACCAAGCGCGCGAGCACGAGCGCTGGCACCGCGGCCTGGGCTACGCGTGCGCTTTGTGCGGCGCTCAGTTCCGCAAGCCCACGTCCCACCTCACGCACATGCGCAAGAAGCACCCCAGCGAGCACGTGTGCGTGCGCTGCGGGGACAGCTTCGTGGGGCGGCGCGGCTTGGTCGTGCACAACACTAAGTCCCACCGGGACGTGGGGCCTCAGGAGGACACTCCAGAATCGGAGCGGACATGTAAAGAATGCAACATCGTTTTCCTAACAGTCGAGGCGTGCAAGCGTCATACGGTTAACTCTGTAAAGCACAAACATGACACTGAAAATAGCAACGCGTGCAGCAAGTGCGCGGAGCGCTTCCCGTCGGCGGCCGCGCTGCTGGCGCACCAACGGGCGCACGGGCCGCGCCGCCCGCCGCCCGTCGCGCGGCTAGCGTGCTCCTACTGCGGCGTGCAGTTGGCGGGCAAGTCTAAGCTGCACGCGCACGTGCGGCGCGTGCATCTCGGCATCAAGTATAACAAGAACATCGTCTGCGAACTCTGCGGGAAGAAGTGCACGTCGAACGCGACCCTCCGCTACCACCAGCGCACGCACACAGGCGAGCGGCCGTACGCCTGCACCGCGCCCGCCTGCGCGCGCCGCTTCGCAGACAGCAACCAGCTGCGGATACATGCGCGCACGCACAGCGGTGAGCGGCCTTATAGCTGCGAGGTCTGCAGCAGAGCCTTCCGACAGAAGCCGGCGCTCAACCGACATATGCGGGTCCACACGGGGGCGAAGCCCTACGGCTGCCATTACTGCGCCAAGACATTCAGCCAGTCCAACTCGCTCAAGCTTCACATCCGCACCGTGCACTTCAAAGTGCCCTCTAACACCAAAAGGCACAAGGTTCAGATTGCCACGGCCGAGAAGGAAATGTCGATCAACGTTTGA
- Protein Sequence
- MYGLGLRPRPSASAWMELGLRPRRGGVLRARFAELGLRPRKFVPSGFCVVAYSPKMYSLGHRPRPERSSAFGLAEAIFLGPASRGSAFGLASLSHLAFALLLVRRKMYGLGLDGARPSASPRRERPYAVGVSCPECMREFKNDQYLKEHMQIHNGLEMKVSCELCNKMFHSQHCLKKHKKFVHPEGKQKHQCVHCNKEFAHEYYLRRHISGVHMKTDESEWQHKCDRCGKKFKVLKYLKNHMMKHAADLRRHIDAVNVETDKSVWPHKLTQCGKEVQGPESRGAFRCGVCSLRYASARQLRAHEISAHARQYHCLTCAHRSHTAHQAREHERWHRGLGYACALCGAQFRKPTSHLTHMRKKHPSEHVCVRCGDSFVGRRGLVVHNTKSHRDVGPQEDTPESERTCKECNIVFLTVEACKRHTVNSVKHKHDTENSNACSKCAERFPSAAALLAHQRAHGPRRPPPVARLACSYCGVQLAGKSKLHAHVRRVHLGIKYNKNIVCELCGKKCTSNATLRYHQRTHTGERPYACTAPACARRFADSNQLRIHARTHSGERPYSCEVCSRAFRQKPALNRHMRVHTGAKPYGCHYCAKTFSQSNSLKLHIRTVHFKVPSNTKRHKVQIATAEKEMSINV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -