Ycag013683.1
Basic Information
- Insect
- Yponomeuta cagnagella
- Gene Symbol
- -
- Assembly
- GCA_947310995.1
- Location
- OX371295.1:7584626-7587073[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.5 1.1e+02 4.1 0.3 1 23 46 69 46 69 0.92 2 18 0.63 45 5.3 0.0 2 23 96 118 95 118 0.95 3 18 5.2 3.7e+02 2.4 2.3 5 23 144 162 140 162 0.86 4 18 0.00028 0.02 15.9 0.4 1 23 166 188 166 188 0.97 5 18 0.049 3.5 8.8 2.6 1 23 193 216 193 216 0.96 6 18 0.0013 0.09 13.8 0.7 2 23 224 246 223 246 0.95 7 18 0.00051 0.036 15.0 4.2 2 23 254 276 253 276 0.96 8 18 0.037 2.6 9.2 4.4 1 18 282 299 282 299 0.93 9 18 0.089 6.3 8.0 0.3 1 23 378 401 378 401 0.93 10 18 0.04 2.9 9.1 0.2 2 23 427 449 426 449 0.95 11 18 0.016 1.1 10.4 0.4 1 23 470 492 470 492 0.97 12 18 0.03 2.2 9.5 0.1 1 23 496 518 496 518 0.93 13 18 0.00019 0.013 16.4 1.8 1 23 523 546 523 546 0.97 14 18 0.0012 0.085 13.9 0.4 3 23 555 576 554 576 0.95 15 18 0.0054 0.38 11.8 2.5 2 23 584 606 583 606 0.95 16 18 0.0011 0.079 14.0 0.3 1 23 612 634 612 634 0.93 17 18 1.1e-06 7.6e-05 23.5 0.8 1 23 640 662 640 662 0.99 18 18 4.4e-07 3.2e-05 24.7 0.9 1 23 668 691 668 691 0.97
Sequence Information
- Coding Sequence
- ATGAGTCAAAACTCCGAAGATGAGACAATGACGAAGCCGAGGAAGGGCGAAGAATTGGACAAGCATCGTCAAaacgtccgcataattctacaatattccaatgctacacctataagatgtaaaaacggaatgggttacgtctgctctttttgcatggattcatttcctgaacccaaagaccttaaaatgcacacactagagcgacacgacgagaaaagcaaactgaaattcatgaaaaataaacctatgatgggctatgtagtcaagttagacataaccggtctccgttgcgaggtatgcgcacaaaacattgaaaccctcaatcagctaatcgaccatctcatcacagaacacgataaaaaaatacacactgacattaagaaccacattctgccatttaagttcggagacgacgtactacgctgcattttctgcgccagtcacttcagcaagttcaaaactttgcaggaacacatgaacgcgcactaccgtaactacgtctgccctgtctgcgacgcaggtttcgtcaacagaggatatctgcacgctcacaaatacaagcacagtacaggcgtgttcaaatgtgactactgcccaaaagttcttgagagtcacttcaagaaacaaaagcacgaaaaagtcgttcacgtacacaaaggaaagactagcaaatgcacttattgtggcgaaaaatttagcgtctactcgactaggaacgagcatatggtaaaggtgcacggcgcaaagcctctagtgctgaagtgccaagcctgtgacaaaactttcagcaaacgatgcgcgttgacaaggcacaccaagcgagaccatctcatggagcgaagacatgaatgcaccgattgcgataaaagatttttctcgaaaaaacagttgtGTAAACTACGGCTAAGATCTAAAAATAATATCGACGTAGTGATTAAAAAAGAGAGAACGGATGATGAATCTGAAGAAGAAAATTTGAGCCTAAGTTTGCTGGAAGATAGAAACATAAAGAAAAAGGCACCCGAACAAAAACCCAAGCGCGGGGTAGAAGTAGCCAAACTCCGAGATAACATACAGATAATCCTTGCTTGCTCCAACGCTACGCCAATCAAGAACAAAGACCACTTCGGTTATAGCTGTAACTTCTGTAAAGATAAATTCAAAGAGGCCGCCGGACTTAAAGTCCACACTTTAGACGTGCACAAAAAGGAATTCTCAACGTTCTACACATTCCGTGCTCTACAAAgctttttagtaaaactagatgtcaccaacttacactgcaacatttgcgagacaccccttgatacactagaagatctatattcccatctaaaggtcgtccacaagaaacctcttcacgacgtgaaaaaccactttgttcccttcaagtttcttaccgattcattcgattgtgccatgtgcaccaatagctataactccttcaaagcgttggtcgagcatatgagcacgcactactcaaattacatttgcaaggtctgcggcgcgggttttgtcacgagcagaatcctccagacccatggttacaggcacaaaacgggcgagtttccttgttcgacttgcaaaaaagttttcaagaccaggacgaacagaaacgagcacgagcggtcggtgcacaaattgggtagcaagaaaaacccttgcccttactgcggcaagatgtttggtcattacactgccaaaaacctgcacatggcgaaggtccacggagtggacttgcccgcgctacaatgcaagtgttgcgatcgcgccttcccgactcaaaaccgtctgaaccagcacataaaaagggatcatctcggggaaagagatttcgagtgcgaggtgtgtggtaaggggttctttgcaaaacgccagttggaacagcacgaggtttatcacacgggcgtcagggattttcaatgcgacgtctgctccaagcgttttttccgtaaatctgcgctgatcgtccatctcaggatccataacaacgagaaaaagtttacgtgcgGGACTTGTGATAGAGCGTTTTCACAGAACAGCTCTCTGAAGACGCACATGAAGTTGATTCATAATGTTTTCTGGTAG
- Protein Sequence
- MSQNSEDETMTKPRKGEELDKHRQNVRIILQYSNATPIRCKNGMGYVCSFCMDSFPEPKDLKMHTLERHDEKSKLKFMKNKPMMGYVVKLDITGLRCEVCAQNIETLNQLIDHLITEHDKKIHTDIKNHILPFKFGDDVLRCIFCASHFSKFKTLQEHMNAHYRNYVCPVCDAGFVNRGYLHAHKYKHSTGVFKCDYCPKVLESHFKKQKHEKVVHVHKGKTSKCTYCGEKFSVYSTRNEHMVKVHGAKPLVLKCQACDKTFSKRCALTRHTKRDHLMERRHECTDCDKRFFSKKQLCKLRLRSKNNIDVVIKKERTDDESEEENLSLSLLEDRNIKKKAPEQKPKRGVEVAKLRDNIQIILACSNATPIKNKDHFGYSCNFCKDKFKEAAGLKVHTLDVHKKEFSTFYTFRALQSFLVKLDVTNLHCNICETPLDTLEDLYSHLKVVHKKPLHDVKNHFVPFKFLTDSFDCAMCTNSYNSFKALVEHMSTHYSNYICKVCGAGFVTSRILQTHGYRHKTGEFPCSTCKKVFKTRTNRNEHERSVHKLGSKKNPCPYCGKMFGHYTAKNLHMAKVHGVDLPALQCKCCDRAFPTQNRLNQHIKRDHLGERDFECEVCGKGFFAKRQLEQHEVYHTGVRDFQCDVCSKRFFRKSALIVHLRIHNNEKKFTCGTCDRAFSQNSSLKTHMKLIHNVFW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -