Ycag013676.1
Basic Information
- Insect
- Yponomeuta cagnagella
- Gene Symbol
- -
- Assembly
- GCA_947310995.1
- Location
- OX371295.1:7507079-7512300[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.039 2.8 9.1 2.3 1 23 73 95 73 95 0.95 2 32 1.4 1e+02 4.2 0.1 2 23 121 143 120 143 0.95 3 32 0.0013 0.09 13.8 1.6 1 23 165 187 165 187 0.99 4 32 0.0085 0.61 11.2 0.5 2 23 192 213 191 213 0.92 5 32 0.14 10 7.3 0.3 1 23 217 240 217 240 0.89 6 32 0.045 3.2 8.9 4.2 2 23 247 269 246 269 0.96 7 32 0.088 6.3 8.0 0.7 2 23 277 299 276 299 0.94 8 32 5.4e-05 0.0039 18.1 2.9 1 23 305 327 305 327 0.97 9 32 0.017 1.2 10.3 4.5 1 23 400 422 400 422 0.96 10 32 0.084 6 8.1 0.1 2 23 448 470 447 470 0.96 11 32 0.016 1.2 10.3 2.3 1 23 492 514 492 514 0.98 12 32 0.0095 0.68 11.1 0.3 2 23 519 540 518 540 0.92 13 32 0.99 70 4.7 0.4 1 23 544 567 544 567 0.82 14 32 0.013 0.94 10.6 3.7 2 23 574 596 573 596 0.95 15 32 0.00058 0.041 14.9 1.3 2 23 604 626 603 626 0.95 16 32 0.0021 0.15 13.1 2.1 1 23 632 655 632 655 0.96 17 32 0.13 9.4 7.5 0.8 2 23 665 686 664 686 0.97 18 32 0.02 1.4 10.0 0.2 2 23 715 737 714 737 0.94 19 32 0.0033 0.24 12.5 2.1 2 23 758 780 757 780 0.95 20 32 0.0022 0.16 13.0 4.0 1 23 785 808 785 808 0.95 21 32 0.017 1.2 10.2 2.4 1 23 813 836 813 836 0.95 22 32 7.4 5.3e+02 2.0 0.1 2 23 839 861 839 861 0.90 23 32 0.11 7.9 7.7 0.5 2 22 868 888 867 888 0.94 24 32 0.18 13 7.1 0.3 1 23 940 963 940 963 0.89 25 32 0.64 46 5.3 0.3 3 23 992 1013 990 1013 0.91 26 32 0.081 5.8 8.1 0.6 3 23 1037 1059 1035 1059 0.96 27 32 0.00091 0.065 14.3 0.6 3 20 1066 1083 1064 1087 0.90 28 32 0.0074 0.53 11.4 0.8 1 23 1092 1115 1092 1115 0.97 29 32 0.0013 0.094 13.7 0.6 2 23 1121 1143 1121 1143 0.92 30 32 0.00011 0.0076 17.2 4.0 1 23 1147 1170 1147 1170 0.97 31 32 0.00016 0.011 16.7 0.4 2 23 1177 1198 1176 1198 0.96 32 32 0.013 0.91 10.6 1.1 1 23 1204 1226 1204 1226 0.96
Sequence Information
- Coding Sequence
- ATGAAATCAGAACTAACATTCACACAAGTTACGTTTCACATTCTAGGTGCCACTGACAGTCAGAGGCCCCACGGGGGACATAGCCAAGAGGTCGACAAAATGACGCCCAACGTGGGGAAACTGTCTCCAACAAAAATATACAGACTGAGGAGGAAAAACGCCATCACAATATTAGAATCGTCCAACGTCATACCATTCAAGTGGCAGAGACAAACGTATCTTTGCTTCTACTGCCATAAGGCTTTTTACAAGACCGCGCCGTTAAAAGAACACACGGTGACTCACAAAACCTCTAGCATCTCATCGGCAGTAACGTACTTGAAAGGGGACGAGAACGTCAAGGTTGACGTCACGGATATCAAATGCGAACTGTGCAAAGCGGAAATGAGCGATTTGAACGCGCTAATAGACCACCTAAAGTCGCAACACGATAAACCGTTCGCGGAAGAGCACGGTTATGGCGTGATACCCTACAAACTTCGGGAGGACGAATTCAAATGTGCAATCTGCAGCAAAGATTTCCAGTATTACATTAAACTGAACCAGCATATGAATTCCCACTTCGGAAATCTAGTCTGTGAGACGTGCGGAAAGTCCTTCCTCAGTCAAAGTAGGCTTCGCAGTCACTCCCTAGGTCACGGCGCAAAGTTTGCCTGCAAAGAGTGTCCGGAGACCTTCCAATCGCTCAAGAAACGGATAAACCACGAAGCCAGAGTTCACAACAAAAAGAAGACGCTGAAATGTCAAGTTTGCGACGAGACGTTCCAAACGTTTACGTCGAGACAGAAACATCACCGCGTGAAACACAATATAGGAGTGCCCGCGATTCATTGTCCCGTATGCGACAAGGACTTCCAAGCCATCAGTCGCATGCAGAGGCACTTGAAACAGGTGCACGTGAAAGAGAAAAACCACACTTGTTCGATGTGTGAACAGCGGTTTTTCGATGCATCTAATTTGCGCAAGCATATGGTTAAACACATCGGCGAGCGCACGTATAAATGCAATGAGTGCTGCAAGGCTCAAGGGCCCCACGGGGCACAGGGACAAAAGGCTAACACGCGCCAAAAGGTCGACAAAATAACGCTCAACGTGGGGAAACTAACTCCAACAAAAATATACAGGCTGAGGAAGAAAAACGCCCTCACAATACTAGAATCTTCTAACGTCATACCTTTCAAGTGGCAAAGGCAAACGTTCTTTTGCTTCTACTGCCACAAGGCGTTTTACAAGACTGCCACGTTGAAAGAGCACACGGTGACTCATAAAACGTCTAGCGTCTCAACGGCAGTATCAAACTTGAAAGGGGACGAGATCGTGAAAGTCGACGTCACAGAAATCAAATGCAAACTTTGCAAAGCAGAAATTAGCGATTTGAACTCACTGATAGCCCACTTGAAATCGACACACGACAAACGTTTCGCGGAAGAGCACGGTTACGGAATAATACCCTTCAAACTGCGAGAAGAAGAATTCAAATGTGCAATCTGCAGTGAGGAATTTCACTATTACATCAAACTGAGCCAGCATATGAACTCACACTTCGGAAACTCGGTCTGTGAGACGTGCGGAAAGTCCTTTCTTAATCCAAGCAGGTTGCGAAGTCACTCGCTAGGTCACGGCGCAAAATTTGCCTGCAAGCTGTGCCCCGAGACCTTCCAATCTCTCAAGAAGAGGTTAGACCACGAAGCGAAAGTCCACAACAAAAGGAACATGTTGAAATGTCAAGTTTGCGACGAGACATTCGAGACCTTTTCATTGAGACGCAAACATCACCGCCTGAAACACAACATAGGAGTCCCGGCCATACACTGTCCCGTTTGTAACAAGGAGTTCCCAACGAAAAGTCGGATGCAAAGCCACCTGAAACAGGTGCACGTGAAGGAAAGAAACCACCCGTGTGCTATGTGCGAGCTGCGATTTTTCGAGGCTTCACATTTGCGTAGGCATGTCAGGGTTAGACACAGCGACGAGCGCACTTACACTAATGTGAGATGCTTCTACTGTAGCGAAAACATAACGGAATACAATGACCTCCGCAAACACACTTTGACACACGGAAAATGCTCTCTAGAGGACCACTCCATAAAAGTCATCAAAGGTGGCCACAACATGGAGGTCAAAATTGATATCTCTGCCATTACCTGCGAGAAATGCAACGAGACATTTCCGTCCTTTGATGAGATTGTGAACCATTTGACTGTAAAACACAAGCTTCAGTACGACAGCACTATCGAAACAGTCCTTGAGCCTTACAAGCTTGATGACCTGACTTGCCATCTTTGCCAAGAAAAGTTCACATATTTTGGCTACCTAGTGTCCCATATGAATAATAACCACCCCAAAAACTGTCATATTTGCGACAAGTGCGACCAGAAGTTCAATAAACGCAGGGACCTCTTCTCCCACATTAAGAACTATCACAGAGAAGGCGGGTACCAGTGCGAGTTATGCCCTCACAAGTTCACAACGCTAAATATATTGAGGAAGCATCAGGAGAACAGGCATCTAAGAAGATGCGAGGTGTGCCAGCTGAAACTTCCGTCGGCAGCACTGAAGCGTCGCCACGTGGCTTTAGAACACCCAGACGATGGTACTCTACAGTGTCGTCAGTGTAGGAAACAACTGAGAACTCCTCAAGGCTTACGAATGCACGTCAGACGATGTCGCCCTGATACAACCGCAGGGTCCGCAGATTCGGACACCGATGCCGACGACGCTACACTGCGACGGCAAAGCGTCCAGCAGATTAAGCAGAATATACTAACGGTCATAAACATGTCCACAGCAATACCTTTCAGTTTTTACAAGAACAAGTTCAACTGCTTTTTCTGCTCCGAGGACTTTGCTGACTCCGACTCTATGAGGGAGCATACTGTATTAGCGCATCCAGTTTGCGATATCAAATCTAAATGTATTAAAAAGTGTAGGGAATCCAATGTCACTGTTAAGTTAGATATCTCTTCGTTAGCCTGCAAAGTGTGTTTCGAATCCATGCCAGATCTTGACCATCTAATCAATCATTTGACAGAGAAACACGGTGCGAACTATGACAAATCTTTAAGCTCATCTCTGCAACCCTACCGACTTATAAAAGACCACATGGCGTGCCCGCACTGCCCCAACGAGGTGTTCCGTTTTTTCGGCACGTTGCTGAAGCACATAAACTCCAATCACACCAACAACAACATCATTTGCGTGTACTGCGGCCAGACGTTCCGAAAGGAGCAAAACTTACGCGTCCATATATGGCGACATCACAAAGAAGGCCAGTTCAAATGTACGATCTGTGACGCTGAGTGCACGATGCCATCCCGCCTTTACATGCACATGGCGAAAGTTCACGGTGTGAAAGCGGCTAAATGTAGCAAATGCGGCGAGAGGTTCGCCACGCAATATTTGCGTCAAAAACATTTGATCGACGCCCACAATTCGGGCCATAAGTGTTCCTATTGCGGGAAGCTCTTTGTCAGAAACTCGTTCATGAAAGACCACATTAGACGAACGCATTTGAAGGAGAAGAACGTGGAATGTTCCGTCTGTGGTATGAAGTTCTTCAATAATATCTTGTTGAGGCGTCACATGGTTAAGCATAGCGGAGAGAAGAATTTTCACTGCGACATCTGTGGCGAAAGGTTCTTTTGGCGCAAAGGGTTGGTTAGGCATATGGGACGGCATACAAAGCATCCTGCGGCGTCGATGTAA
- Protein Sequence
- MKSELTFTQVTFHILGATDSQRPHGGHSQEVDKMTPNVGKLSPTKIYRLRRKNAITILESSNVIPFKWQRQTYLCFYCHKAFYKTAPLKEHTVTHKTSSISSAVTYLKGDENVKVDVTDIKCELCKAEMSDLNALIDHLKSQHDKPFAEEHGYGVIPYKLREDEFKCAICSKDFQYYIKLNQHMNSHFGNLVCETCGKSFLSQSRLRSHSLGHGAKFACKECPETFQSLKKRINHEARVHNKKKTLKCQVCDETFQTFTSRQKHHRVKHNIGVPAIHCPVCDKDFQAISRMQRHLKQVHVKEKNHTCSMCEQRFFDASNLRKHMVKHIGERTYKCNECCKAQGPHGAQGQKANTRQKVDKITLNVGKLTPTKIYRLRKKNALTILESSNVIPFKWQRQTFFCFYCHKAFYKTATLKEHTVTHKTSSVSTAVSNLKGDEIVKVDVTEIKCKLCKAEISDLNSLIAHLKSTHDKRFAEEHGYGIIPFKLREEEFKCAICSEEFHYYIKLSQHMNSHFGNSVCETCGKSFLNPSRLRSHSLGHGAKFACKLCPETFQSLKKRLDHEAKVHNKRNMLKCQVCDETFETFSLRRKHHRLKHNIGVPAIHCPVCNKEFPTKSRMQSHLKQVHVKERNHPCAMCELRFFEASHLRRHVRVRHSDERTYTNVRCFYCSENITEYNDLRKHTLTHGKCSLEDHSIKVIKGGHNMEVKIDISAITCEKCNETFPSFDEIVNHLTVKHKLQYDSTIETVLEPYKLDDLTCHLCQEKFTYFGYLVSHMNNNHPKNCHICDKCDQKFNKRRDLFSHIKNYHREGGYQCELCPHKFTTLNILRKHQENRHLRRCEVCQLKLPSAALKRRHVALEHPDDGTLQCRQCRKQLRTPQGLRMHVRRCRPDTTAGSADSDTDADDATLRRQSVQQIKQNILTVINMSTAIPFSFYKNKFNCFFCSEDFADSDSMREHTVLAHPVCDIKSKCIKKCRESNVTVKLDISSLACKVCFESMPDLDHLINHLTEKHGANYDKSLSSSLQPYRLIKDHMACPHCPNEVFRFFGTLLKHINSNHTNNNIICVYCGQTFRKEQNLRVHIWRHHKEGQFKCTICDAECTMPSRLYMHMAKVHGVKAAKCSKCGERFATQYLRQKHLIDAHNSGHKCSYCGKLFVRNSFMKDHIRRTHLKEKNVECSVCGMKFFNNILLRRHMVKHSGEKNFHCDICGERFFWRKGLVRHMGRHTKHPAASM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01545064;
- 90% Identity
- iTF_01545064;
- 80% Identity
- -