Ycag017461.1
Basic Information
- Insect
- Yponomeuta cagnagella
- Gene Symbol
- -
- Assembly
- GCA_947310995.1
- Location
- OX371278.1:12972607-12999645[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00033 0.024 15.6 1.7 1 23 419 441 419 441 0.96 2 20 0.0047 0.33 12.0 0.6 1 20 447 466 447 469 0.94 3 20 3.4e-05 0.0024 18.7 3.5 1 23 489 511 489 511 0.98 4 20 0.00021 0.015 16.3 4.7 1 23 517 539 517 539 0.99 5 20 4.2e-05 0.003 18.5 5.3 1 23 545 567 545 567 0.97 6 20 9e-06 0.00064 20.6 7.1 1 23 573 595 573 595 0.97 7 20 1.7e-05 0.0012 19.7 3.3 1 23 601 623 601 623 0.97 8 20 0.00011 0.0081 17.1 6.7 1 23 629 651 629 651 0.97 9 20 0.00011 0.0081 17.1 6.5 1 23 657 679 657 679 0.97 10 20 5.5e-07 3.9e-05 24.4 1.9 1 23 685 707 685 707 0.98 11 20 1.1e-05 0.00077 20.3 7.7 1 23 713 735 713 735 0.98 12 20 0.00015 0.011 16.7 6.5 1 23 741 763 741 763 0.97 13 20 7.2e-07 5.1e-05 24.0 5.4 1 23 769 791 769 791 0.98 14 20 7.8e-05 0.0056 17.6 6.3 1 23 797 819 797 819 0.96 15 20 1.9e-05 0.0014 19.5 6.2 1 23 825 847 825 847 0.97 16 20 1.1e-06 7.6e-05 23.5 6.0 1 23 853 875 853 875 0.98 17 20 6e-05 0.0043 18.0 8.2 1 23 881 903 881 903 0.97 18 20 5.6e-06 0.0004 21.2 4.7 1 23 909 931 909 931 0.97 19 20 0.00038 0.027 15.5 1.8 1 23 938 960 938 960 0.97 20 20 0.03 2.1 9.5 6.3 1 23 970 992 970 992 0.99
Sequence Information
- Coding Sequence
- ATGAATCCGGAGCATCATCCTATCAATGCGGGTGGCGGCCAACCCCCAGGGAACTCCGAGTCACAGGGCCAGCGAGCTCAGGCTTCTCAACAGCAGACAGCTACGTTGACGCCGACTACATCAGCCACAGACCTGAGAGTGAACTCTGCAGTGAATGTTGCTTTGTCAAGTGTCGCCAAATATTGGGTGTTCACAAATCTGTTCCCTGGACCTATACCTCAAGTGTCTGTCTATGGACTCCCTACTGGAGCTCGCATAGAAAATGGAAAGCCCATTCAGGATGCTCTTGGCCAAACCCATGCTAGTATTCTCAATGGAGACCCAAATATTATCCTCGGCCATCATACTGGTGGGCAGTCCGTGACTGTCTCAGGGCCAGGAGGCCAACAAATACCAGTCACACAACTCATTGCCTCGCAGTCTGGACAGGGTCATGAAGCACTGGTTGCGCAGCAGCAGGACTTGGGTCAGCAGGGTTCCAGCGCCGGAGTATCAGTCAGCACGGGCTCTGGCCACCAGCAGGTACCCAATAACCGGGTGGAGTTTGTACAACACCATAACATAGATATGGGTCACCACTCTCAGCAGCATATAATACAGCAGCAACTGATGACTGCAGCACGACCTGACCATGCCAATCAGCAGATCCAGTTGACAGTAAGTGAAGATGGCATAGTGACGGTGGTGGAGCCAGGCGGGGGGAAGTTGGTCGACAAGGAAGACCTTCATGAAGCTATCAAGATGCCCACGGACCATGCTTTGACAGTCCACCAGCTGCAACAAATTGTTGGGCAGCAGGTTATAGACAGCGTGGTCCGCATAGAACAAGCGACCGGAGAACCGGCCAACATCCTAGTAACGCATAACCCTGACGGCACTACCTCCATAGAGGCGAGCGCGGCCGACCCGCTCGTCGTCAAGGACGAGAAGAGCTCCAAGATGGACACGACGCCGCAATTCGCGATACCTACCGAGATCAAGGACATTAAAGGCGCTATCGACTTGAAGAACGTAAGCGCCATGAACATGGAAGGTGCCGTCGTGAAGATATCGGCCGGGGCTTCCGAGCACGATCTCCATGCCATGTACAAGGTCAACGTGGAGGACCTGTCGCAGTTGCTGGCGTACCACGAGGTCTTCGGGAAACTAAACGCCGAGGGACAGACGCAGGCTAAGCAGCCCAATATGGTGGAAATCGAAGTGGAAGCCGGTACCAGCGCCACGATATCCGAATCGGACGCCTCCCCCGGCCACCACGCCTGCGACCTCTGCGGCAAGATATTCCAGTTCCGCTACCAGCTCATCGTGCATAGACGCTACCACGGAGAACGCAAACCGTTTACGTGTCAAGTGTGCGGCTCGGCTTTCGCTAATCCCGTTGAACTTTCCAGACATGGGAAGTGTCATGTTGCCGGGGCCCAAGAAGTAGAGAGGAACGCTAAGCGGCTAGCGCAGGACAAACCCTACGCCTGCACGACGTGTCACAAGGCCTTCGCACGGAAGGAACACCTAGACAACCACGTGCGGAGTCACACGGGGGAGACGCCTTACAGATGCCAGTTCTGCGCGAAAACGTTTACACGCAAGGAGCACATGGTGAACCACGTGCGGAAACACACCGGCGAGACGCCCCACCGCTGCGACATTTGCAAGAAGAGCTTCACGAGAAAGGAGCACTTTATGAACCACGTCATGTGGCATACGGGTGAAACGCCGCACCATTGTCAAATTTGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGCGAACCACATGCGCTCGCATACAAACGACTCGCCTTTCCAATGCGAATTGTGCAGCAAATCGTTTACGAGGAAGGAACACTTCAGCAATCACATACTGTGGCACACCGGCGAGACGCCCCACCGTTGCGATTTCTGCTCTAAAACGTTCACGCGAAAGGAGCACCTACTCAACCACGTGCGCCAACACACAGGGGAGTCGCCGCACCGCTGCAACTTCTGCTCCAAGTCGTTCACGCGCCGCGAGCACCTCGTCAATCACGTGCGGCAACACACTGGCGAGACGCCCTTCCAGTGCGGGTACTGCCCCAAGGCGTTTACCAGGAAGGATCATCTCGTGAACCACGTCCGGCAACACACGGGCGAGTCTCCCCATAAATGTTCCTACTGCACCAAATCGTTCACCCGCAAGGAACACCTGACGAATCATGTGCGGCAACACACTGGCGAATCCCCGCACCGGTGTTCCTTCTGCGCCAAGTCCTTCACACGGAAAGAGCACCTCAACAATCACGTTCGCCAGCACACGGGCGAGACGCCGCACAAGTGCACGTACTGCCCGAAAGCGTTCAGCCGGAAGGAGCACCTCAACAACCACATCCGGCAGCACACCGGTGACCTGCCCCACGCCTGTACGTTCTGCAGCAAAACGTTCAGCCGCAAGGAGCATCTCACCAACCACGTGCGGCAACACACCGGCGAGACACCGTTCAAGTGCACCTACTGCGCCAAGTCGTTTTCCCGAAAGGAGCATCTGACGAATCATATACACCTGCACACCGGAGAGACGCCACACAAGTGTCCCTTCTGTACCAAGACATTCTCCCGGAAGGAGCATCTCACCAATCATATCAGGATACACACGGGGGAGTCGCCGCACCGATGCGAGTTCTGCCAAAAGACATTCACACGCAAGGAACACTTAAACAACCATCAGAAACAACACACGGGCGACACACCGCACATGTGCAAAGTCTGCTCCAAGCCTTTCACCAGGAAGGAGCATCTCGTCTCACATATGAGATCGCATAGTTGCGGCGAACGGCCGTTCAGTTGTGAACACTGCGGCAAGTCGTTCCCACTGAAGGGCAACCTTATGTTCCACGAGCGATCGCACTACAAAAGCGGCGCCGGCGCGCGCCCCTTTAGATGCGAGGTCTGCTCTAAAGATTTCATGTGCAAAGGCCACCTGAACACGCACCGCCGGACGCACGCGGACGGTGCGGCGAGCGGCGCGGCGGCGGCGGCGGCGCCCGACACCGAGGAGTGTACGAGTGCTTGCGCCAAGCTGGAGCCCGCCACCGAAGACGTCGCGCCCGCGGATCAGCCGCAGCGCTTGGAGCGGAAGATCGAGAGGCGCGGCGCTCCCACCTCCTCCGCGCTCCCACCTCCTCCGCAGCGCTTGGAGAGGACGATTGAGAGAAATTCTACTGAAAACAGGACCAGCGAAGCTACGGTAGCGCAGAATGTGCAAAACAACGCGACTGTGATGCAAATAACTAGCCAGCAGGTCCGCGCGGGAGTGGCGACGAGCGGAGCCGACGCAGCCGCCAACGTAACGACGTATACGCACACGCCGGCGATCGCGCACCACCCCGTCACGGTCAACTATTAG
- Protein Sequence
- MNPEHHPINAGGGQPPGNSESQGQRAQASQQQTATLTPTTSATDLRVNSAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGARIENGKPIQDALGQTHASILNGDPNIILGHHTGGQSVTVSGPGGQQIPVTQLIASQSGQGHEALVAQQQDLGQQGSSAGVSVSTGSGHQQVPNNRVEFVQHHNIDMGHHSQQHIIQQQLMTAARPDHANQQIQLTVSEDGIVTVVEPGGGKLVDKEDLHEAIKMPTDHALTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAADPLVVKDEKSSKMDTTPQFAIPTEIKDIKGAIDLKNVSAMNMEGAVVKISAGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNAEGQTQAKQPNMVEIEVEAGTSATISESDASPGHHACDLCGKIFQFRYQLIVHRRYHGERKPFTCQVCGSAFANPVELSRHGKCHVAGAQEVERNAKRLAQDKPYACTTCHKAFARKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLANHMRSHTNDSPFQCELCSKSFTRKEHFSNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCSFCAKSFTRKEHLNNHVRQHTGETPHKCTYCPKAFSRKEHLNNHIRQHTGDLPHACTFCSKTFSRKEHLTNHVRQHTGETPFKCTYCAKSFSRKEHLTNHIHLHTGETPHKCPFCTKTFSRKEHLTNHIRIHTGESPHRCEFCQKTFTRKEHLNNHQKQHTGDTPHMCKVCSKPFTRKEHLVSHMRSHSCGERPFSCEHCGKSFPLKGNLMFHERSHYKSGAGARPFRCEVCSKDFMCKGHLNTHRRTHADGAASGAAAAAAPDTEECTSACAKLEPATEDVAPADQPQRLERKIERRGAPTSSALPPPPQRLERTIERNSTENRTSEATVAQNVQNNATVMQITSQQVRAGVATSGADAAANVTTYTHTPAIAHHPVTVNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01546831;
- 90% Identity
- iTF_01544150;
- 80% Identity
- -