Ycag010505.1
Basic Information
- Insect
- Yponomeuta cagnagella
- Gene Symbol
- -
- Assembly
- GCA_947310995.1
- Location
- OX371275.1:15037531-15042329[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4e-07 0.00023 21.4 0.0 17 38 1 23 1 26 0.86 2 2 7.7 4.3e+03 -1.9 0.0 33 44 72 83 72 84 0.84
Sequence Information
- Coding Sequence
- ATGGGATATTTGAAAGCTGCTCAAACCTTTGATGTGCCAAAATCAACATTGCAGGACCGAGTTAACCAATTCAGACAAAACATTGATTTAATCTCGTCAACAAGCAAAGTCTGGTCTGATAAATATCTTCGTCGCTTGGCGTTCCAGTTCGCAGAAGCAAATAATATTGAACATGCTTTCAATAGGACTTGCCAGCTAGCGGAAGAAGATTGGTTATCAGAGTTTCTGAAGAGGCACCCAGAATTATCATTACGTGCGGCCGAGCCAATTTTCGTGGCACGAGCCATGGGGTTTAACACTTTTGCGAGGCGCGGCAGCGGCAGGGGCGCCGCGGTGGTGTTGGCGGTGCGGTGCGGGCTGGCAGCGCCGCCGAACACCGCGCCGCCACCTCGTCCGATACGCAAGCGATCCAAACTACCAGGCGCTCAGAACCACAACGGAGTTCTACGCTCAGAAATAAATACAAGTAGTCTCCCCTCTTGCTCGCACTCGGGGCTCCTCGGCCTCGCTCCATCGCCGACCCTCCACTCGCAACGACATGCGCAGTAA
- Protein Sequence
- MGYLKAAQTFDVPKSTLQDRVNQFRQNIDLISSTSKVWSDKYLRRLAFQFAEANNIEHAFNRTCQLAEEDWLSEFLKRHPELSLRAAEPIFVARAMGFNTFARRGSGRGAAVVLAVRCGLAAPPNTAPPPRPIRKRSKLPGAQNHNGVLRSEINTSSLPSCSHSGLLGLAPSPTLHSQRHAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -