Ycag012309.1
Basic Information
- Insect
- Yponomeuta cagnagella
- Gene Symbol
- -
- Assembly
- GCA_947310995.1
- Location
- OX371276.1:2563341-2565306[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-07 6.6e-05 23.1 0.0 5 43 21 59 17 60 0.80
Sequence Information
- Coding Sequence
- atgccaaataaatacaagagaaaagcggtagctattagagggaattggagtgaagaATTGTTAAAAGCTGCCATCATCACTTTGAAAAATCCTGAAATGTCAGTTTATGCTGCTGCGAAAATGTACCAGATTCCAAGAAAAACTTTAGAAAGGCGTTTTAAACAGAATAACGACAAGAAAGGACCTATGGGTCCAAGCTCCTTATTTGGCAAAGAAAATGAAAATAAACTTGCAAACCATATCAAATCAATGCAAGCAAAAGGTTTTCCTTTAACGATTGAGGATGTTAGAAAAATAGCTTATCAGCTAGCTGAACAGTTACATTTAAAACACAGGTTCAACAAGGAAACTGAAAAAGCAGGCTACGACTTTGTTAAATTATTTTTAGGAAGACATCCAGATATCACTTCTGTATCTCCAAATCATGAACGAGATGAAGTTGCAGGAGCTTCAGTAGGACCAGATCGTGAGCTTGTCACTGATAATGAGTCATCTTCTAGTGTAGACGAACATCGAATGTTGAATGTAACCAATGCGATGAACCTAGTCCATGGACAGCGGGAAGGTGCTGAATGCAGAGTGCACCGGGAGAGTTAA
- Protein Sequence
- MPNKYKRKAVAIRGNWSEELLKAAIITLKNPEMSVYAAAKMYQIPRKTLERRFKQNNDKKGPMGPSSLFGKENENKLANHIKSMQAKGFPLTIEDVRKIAYQLAEQLHLKHRFNKETEKAGYDFVKLFLGRHPDITSVSPNHERDEVAGASVGPDRELVTDNESSSSVDEHRMLNVTNAMNLVHGQREGAECRVHRES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -