Ycag011538.1
Basic Information
- Insect
- Yponomeuta cagnagella
- Gene Symbol
- lov
- Assembly
- GCA_947310995.1
- Location
- OX371284.1:5094820-5122766[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.4e-18 3e-15 56.2 0.0 1 44 300 343 300 344 0.96
Sequence Information
- Coding Sequence
- ATGGACGACAAGCAGACCGCGCCGTCTTCCGGCGAGGaacactacagcctgcgttggaacaaccaccaggcgcacctgctacgcgcgttcgaagcgctgctgcacgccgagaccctagtggacgtgaccctggtgtgcgccgagcgccgcgtgcgcgcccacaaagtgctgctgggcgcctgcagcccgctcttccggcggatcttcagcgagaacccgtgcaagcacccggtgatcgtgctcaaagactttcagggatgggaggtgcaggcggtggtggactttatgtaccgcggggaggtgtccgtcgcgcaggagcagctcgggacggtgatccgggccggggagtcgcttcaggtgcgcggcctggcCGAACACGAGCGCGGTGAGGAGCTGAGGACTCCCCCGCAGACGCCGGGACAGAGTCCAGTGGAGCCGACGTCGCCGCCGGCGAGTCCGGCGAGCCCGCAGCCGCGCCGGAAGCAGGCTAGGCCGAGGAGACGCTCGGGGGAGGGCGAGCCGGAGAACTTGTCGATGCGGAGGTCGCCTGGCGGCGGCGGTGGCAGCGGGCTGAAGGCTGTGCGTGTCGCCCGGCCGCGGACGCCGTCCCAGAAGGAGGAGGAGGCCGAGGAGCCGCCGCACCAGCCGAGGATGTTCGCGCCGCACCAGGACATGTTCCCGCCGGTGCCGCCCGTCTCAGCGCTGTCGCtcacgccgccgcacaTGTTCGGCATCGACTCAATGGGCCTGTTCCCGCCGGCGATGGACCACAAGATGTACCCCCTCATGGACATGGACCACAGGCAACTTGACGCGCCTCTCTTCACCAACGTCAAGAAGAAATGGAGGCCAAAGGGGCAGCACAGCGCCCCGCGCGGCGGCCCGCCCCGCTCCTGGACCAACGCCGAACTCACAGAGGCTCTGCAACACGTGTGGAACAAGAAAATGACCACGAGCCAAGCTTCGAGAATCTTCGGCATCCCGTACAACTCCCTTCTAATGTACGTGCGCGGCAAATACGGCAAGAGCCTCAAACTGGAGCAGCTGAGGAAAGACTGCATCGGGGGCCCGCTCGACGTGTTAAACATGAACTCTGGCAACAACAACAACAACCACCCACCAGGCAAACATCACGAGAAAGACGACCAACATCAGAACTCAGGCCAGCGACCCGCGAGCTCGGAGCCCGATATAACCTCGAACCCGATGTTCAACCCCTTTTCGCAGGGATTCTACCCGGAGTTTCCCCCGGGGTTCCCGATGCCGCTAAACATGCTCCACTTACTGCCCCCGAACGAGAAAGGACGGGACCTGTATCAGTCCGTGCCCTTAGCGCTTGACTCTCTATCAGGTCCCAAAGAGGAAGACTGCAAAAGCGATAGGTCTAAGGAAAATTCCGCTGACGAGGAAGGAGATTCCTACAGGGCGCCTCCGCCCCACCCGCCTGACACACGCACACTGTTGCATCACAACGGACAAGATTAA
- Protein Sequence
- MDDKQTAPSSGEEHYSLRWNNHQAHLLRAFEALLHAETLVDVTLVCAERRVRAHKVLLGACSPLFRRIFSENPCKHPVIVLKDFQGWEVQAVVDFMYRGEVSVAQEQLGTVIRAGESLQVRGLAEHERGEELRTPPQTPGQSPVEPTSPPASPASPQPRRKQARPRRRSGEGEPENLSMRRSPGGGGGSGLKAVRVARPRTPSQKEEEAEEPPHQPRMFAPHQDMFPPVPPVSALSLTPPHMFGIDSMGLFPPAMDHKMYPLMDMDHRQLDAPLFTNVKKKWRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCIGGPLDVLNMNSGNNNNNHPPGKHHEKDDQHQNSGQRPASSEPDITSNPMFNPFSQGFYPEFPPGFPMPLNMLHLLPPNEKGRDLYQSVPLALDSLSGPKEEDCKSDRSKENSADEEGDSYRAPPPHPPDTRTLLHHNGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00784544;
- 90% Identity
- iTF_01543098; iTF_01544082; iTF_01543813;
- 80% Identity
- iTF_01543098;