Xsyl020384.1
Basic Information
- Insect
- Xylota sylvarum
- Gene Symbol
- -
- Assembly
- GCA_905220385.1
- Location
- LR999959.1:80684153-80691440[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 6 7.2e+02 1.6 1.8 2 23 163 185 162 186 0.93 2 9 0.027 3.2 9.0 0.0 2 23 201 223 200 223 0.95 3 9 0.43 51 5.2 0.9 2 20 806 825 805 829 0.92 4 9 1.1e-06 0.00014 22.7 2.6 1 23 865 887 865 887 0.98 5 9 0.02 2.4 9.4 4.1 1 20 899 918 899 920 0.93 6 9 1.1e-06 0.00013 22.8 2.4 1 23 925 947 925 947 0.98 7 9 0.014 1.7 9.9 3.4 1 23 953 975 953 975 0.99 8 9 0.00046 0.055 14.5 0.3 1 23 981 1004 981 1004 0.97 9 9 0.086 10 7.4 0.2 1 23 1013 1035 1013 1035 0.97
Sequence Information
- Coding Sequence
- atgaatgaaaacaaCAACAGCTTCTCCAGCTACGATGGTTACTATAGCAATAACAACTTCCAGTTTACAGATCTGACAACACCTTTGGATGTGAACTCTACTAATCACTACTTCAGCTCTATAACAGACGATTTCTCTTCGCCACAAGCATTGACATCTGCATCGACTGTACCCACAACGACGGGATTAAGTGTACATTCCAACAGTATAAACCTTCTACCCTTTGTACAAATTCATACTACCAATGCTCAGCCAACGAATAACAACTTTGGAAACATATTTCGTCGTCAGAACCATGAGGAAATCAAATCTGAAGAACCTATCAAATCGGAGCAAAACGATGCTGCAGCGAGTGCTATTCAACAGCAAAATCCCACCAATTCCACAACAGACTGTCAGAACAGTACTGGACACGTGACACCTACTGCAGCCGTTCAACAACAGACACGACCACAGCCTGTTCCGCAGATAACACCAACAGTGCAGAAATGCACTCAGTGTCCCTTTCTCAGTATACATGTGGAATCATTAGAGAAACACAATGCAACGGTGCATCATTGCAATAATAACGTATCTGCCGGCCAGCAGAGAAAGAAAATTTCCTGTCCTGGCTGTGAGAATATATTCTATGCCAAAGAATCCCTAGAAGTTCATCTGTTGAGCGATCATCTAATGTGCAAGGAAGAAGTTAAGCAACTACTTCTAGATCTATCAGAGGAACAGCCTAGAAAGAGCAGAATTTACCTTAAAAACGTCGAGTTCCTACGTGAACCCATTCGTCAGGAGCAGATACTGAGCCTGGATGAGCATGGGTACTgtaacacatatcaaaactccgATGGGAATAACTTGATCGATATGATGTGCGAGGATAATAATGTCCTGCCAGAAGTTCTTCCTCCGACTGGAGGAAAACAACCTGCAAAGCAGAAGATTTCCATAAAAAGTGTCGATGTTCTAAGAGAACCAGCACTGATGCGAAGGGAGGGGCAAAATAGCTTCGAATTCCTGCCAACGCAAGACGATCAAAGTGATATTCTTTGTCTGGACGGTGGAGAGATCACGAAATATCCAAGTTTTATGCCACAATCAGATCTTACAGACATCTGCACGGAACAGCCTCTGGAGAGTCAAACTTTCGAGAAACCTCGTCGGCCCAAAATCTACATCAAAAATGTGGACATTTTAAAGGAGCCAATATTCCTGCCTCCAGACAATCTAACAAATGTTTTGAATGTAAACGATGATCTTCACTTCAATCTGTTTCCCGTGGAAGAGGAATTTACGGCAATGCCTGGCAAATTCATAGAAGGAGGCGTAAACAATGAGTATACCTTCGACTGTGGAAACAATTTTGTGGATTGTGCTAACTTTCTTCTACCCGAGGACACAGGGTTCATGCAAGCAGATCATGAACCACCGAGAAGTAAAATTTACATCAAGAACGTCGATATCTTGAAGCAGCCGCAATTCCAGGAGCATCCTCGTAGGTCGACTAACTTTTTGCATCTCCGTACAGTAGACGAGCTAAATCTGATGAACAAGAACGAGGTGGAGAACTTGATTGCTCCGAATTTAGAGCAAAACATTGGAGCATCTAATTTGGTCACGAATTCTTCtgaaaattccaaaaattccGAGGAAGTTTGTGCCTTTAGAATGATCAATCAAGACTCGAATTCTTTTAACAAACCAACTGACTTTCAAACACCACCTACAATTAGTTGGACGAGTGATTATGTCCTGGACGGCTTGGATAGTATTATTGATTCGAGTTCCGGTAGTGAGCAGAAGAATCGCCATTATGAGCTCAATACTCCACAGATTTCCATTATGGATGCAGTCAATGATACAGCGGATAACCATGATCCTGAAATTCTGTTTGTCTGTGCTGAGGAACTAATCAATGACAATCGAGAGCATGCAGAAGGTGGCGGCGAAATCACCGAAATTGATCAAAGTTCTTtggaaattgttgaaatcctcgATGACTTAGAACGAGATCAACCCAGTCGAGATTCTGTATTGGATCCGGTTTGCTTCACTTCATCCGAGGGTGGTATGAATGAAATTGGTGGCGAGGTACCAGTCGTGGAAGATGTAGATCAAATGGTTGTGACTCCTGAAAAAGGACGAATCTATGTGGCTGACAATTTGATGGAAATCGAGAGAGACGGTGGCAGTCAAGATACAAGTGATACGGGAGATGGGAATAAAATGAGATCAAGGCCACGGGGACGACCGTTTGGATCGAATCGAACTGGAATAACGAGACTGCGTAAGATGTATGGAAGTTCTTTACTTGTGGAAACAGGTACCAAATGTGATGTCAACGGATGTGCGTTTCGTTTCAAGAAGCCAGACACCTCGGAGTATCACAAACGATGCCATAATACTGATGGATCTCGCCCGATGGTCTGTCCGGAATGCAAATCTACAAATTTCTCGAACTGGAACACCCTGCACACACATCTCTGGCGTAGTCATAAGATTGACATGGAGCTGCACAGTTGTGAACTGTGCAACTTTAAAACACCCATTTACTCGCGGTTAGTGAACACTCATAGCAAAATACATTCCGAAGAACGCAACTATAAGTGTGACCAATGCGAGAAAGCGTTCAAAAACAGCAAACAGTTGAAAAACCATCGACGGTGGCATCGTACCATTGCCATAGCCCCACCACCGGATGTGCATCGTTGTGAGGAGTGTGGTTCGGCATTTTCCCATCTGAAATCACTGCGGGAACACTTCTGTAAAGGCAACGACCTGTTCTGTTGTGAAATTTGCGGCAAAACTCTATCATCCAAGTCGTCGTTAAAGTTGCACATGCTAACGCATGAATCAGTGAAGAAGTTTAAATGCAACTCATGTGATTATATGGCCAACGACCATAATGCCTTTCGAAGGCATCGTATGACGCATGACAAGAGTAAGATGTACGTATGCCCGCTATGTGACTACAAGTCAATTCAGAGTGTTGCATATCAGaAACATATTCGTTTGAAGCATCCGGAATCGGCCGATACAATCGTGCACAAATGCGAATTCTGTCCGTTTGCTACCATCAATGGAGGCCTGCTGACCGTTCACTTAGCCAAGCATAAACTGAGAGAAGAGCACGTTCGAGCAGAAGGACAAAAGGAAAAGGCTAGAACTGCAGCTGTAGCAGCAGCTTCACTATCAATGGCAATTGCCGAAGAGTCCTTTAGTCTCGACAATAATAATGTTAGTAATTCGAATTTAATTGTTTCTGCTATGTCTGTTGCAAGTACAACACCTACCGCCGGCGGGGGACCCACAGCAGAGTTAGATATTAATAAGACCACTGAAAGTTCAACTATCGAGACTGATAACCAGCAACCtaggaataaaattaaagttaagAGTGATTTAGTTTTAACGGATCCAGCAAAATTCTCATCAAGTGTTGTTAGCCCATTATTATTGCATTGTTTTGATAACGCGATAAgatga
- Protein Sequence
- MNENNNSFSSYDGYYSNNNFQFTDLTTPLDVNSTNHYFSSITDDFSSPQALTSASTVPTTTGLSVHSNSINLLPFVQIHTTNAQPTNNNFGNIFRRQNHEEIKSEEPIKSEQNDAAASAIQQQNPTNSTTDCQNSTGHVTPTAAVQQQTRPQPVPQITPTVQKCTQCPFLSIHVESLEKHNATVHHCNNNVSAGQQRKKISCPGCENIFYAKESLEVHLLSDHLMCKEEVKQLLLDLSEEQPRKSRIYLKNVEFLREPIRQEQILSLDEHGYCNTYQNSDGNNLIDMMCEDNNVLPEVLPPTGGKQPAKQKISIKSVDVLREPALMRREGQNSFEFLPTQDDQSDILCLDGGEITKYPSFMPQSDLTDICTEQPLESQTFEKPRRPKIYIKNVDILKEPIFLPPDNLTNVLNVNDDLHFNLFPVEEEFTAMPGKFIEGGVNNEYTFDCGNNFVDCANFLLPEDTGFMQADHEPPRSKIYIKNVDILKQPQFQEHPRRSTNFLHLRTVDELNLMNKNEVENLIAPNLEQNIGASNLVTNSSENSKNSEEVCAFRMINQDSNSFNKPTDFQTPPTISWTSDYVLDGLDSIIDSSSGSEQKNRHYELNTPQISIMDAVNDTADNHDPEILFVCAEELINDNREHAEGGGEITEIDQSSLEIVEILDDLERDQPSRDSVLDPVCFTSSEGGMNEIGGEVPVVEDVDQMVVTPEKGRIYVADNLMEIERDGGSQDTSDTGDGNKMRSRPRGRPFGSNRTGITRLRKMYGSSLLVETGTKCDVNGCAFRFKKPDTSEYHKRCHNTDGSRPMVCPECKSTNFSNWNTLHTHLWRSHKIDMELHSCELCNFKTPIYSRLVNTHSKIHSEERNYKCDQCEKAFKNSKQLKNHRRWHRTIAIAPPPDVHRCEECGSAFSHLKSLREHFCKGNDLFCCEICGKTLSSKSSLKLHMLTHESVKKFKCNSCDYMANDHNAFRRHRMTHDKSKMYVCPLCDYKSIQSVAYQKHIRLKHPESADTIVHKCEFCPFATINGGLLTVHLAKHKLREEHVRAEGQKEKARTAAVAAASLSMAIAEESFSLDNNNVSNSNLIVSAMSVASTTPTAGGGPTAELDINKTTESSTIETDNQQPRNKIKVKSDLVLTDPAKFSSSVVSPLLLHCFDNAIR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00241770;
- 90% Identity
- iTF_01541754;
- 80% Identity
- -