Basic Information

Insect: Xylota sylvarum
Gene Symbol: ush
Assembly: GCA_905220385.1
Location: LR999960.1:38531867-38543902[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.051 6.2 8.1 0.0 6 20 177 191 173 193 0.95

2 9 0.00024 0.028 15.4 0.8 1 23 238 260 238 260 0.98

3 9 0.025 3 9.1 1.0 2 21 285 304 285 305 0.92

4 9 0.041 4.9 8.4 2.9 2 21 678 697 677 698 0.93

5 9 0.0073 0.88 10.7 0.0 3 21 735 753 733 754 0.92

6 9 0.059 7.1 7.9 0.0 1 23 801 823 801 823 0.97

7 9 0.012 1.4 10.1 1.3 1 23 829 851 829 851 0.99

8 9 0.00015 0.018 16.0 0.6 1 23 929 952 929 952 0.96

9 9 0.15 18 6.6 1.0 2 20 1084 1102 1083 1104 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.051	6.2	8.1	0.0	6	20	177	191	173	193	0.95
2	9	0.00024	0.028	15.4	0.8	1	23	238	260	238	260	0.98
3	9	0.025	3	9.1	1.0	2	21	285	304	285	305	0.92
4	9	0.041	4.9	8.4	2.9	2	21	678	697	677	698	0.93
5	9	0.0073	0.88	10.7	0.0	3	21	735	753	733	754	0.92
6	9	0.059	7.1	7.9	0.0	1	23	801	823	801	823	0.97
7	9	0.012	1.4	10.1	1.3	1	23	829	851	829	851	0.99
8	9	0.00015	0.018	16.0	0.6	1	23	929	952	929	952	0.96
9	9	0.15	18	6.6	1.0	2	20	1084	1102	1083	1104	0.92

Sequence Information

Coding Sequence: ATGTGCCCCGAGAAAGATCTGGCTGAATCAGAAACAAAGGATCTTAGCCCAAGCGATTTGAATGAGCAAGCCGATGCGGCGTCGTCGGCGGATATAGATCAATCGGCTGAACCGCGAACCCCGTTCACAACTGAATCCCTGATGGAAGACAATCGTCCATCCTCGAGTACACCTCGAACATTATCACCGCCCTCGGAACCGGAAGCAGATGACCAGCATCCGCTTTCGGTTCGAACGGATCTTCAATCGGGGGCTAATTCTCCCTCAGAACATGATGATTCATCAATAGTTCCTGCTGTCGCTGTTGCTGCGATTCCTAAGCTACGGCTAAATGCACTCTTAGCTTCTGATCCCGCCCTAAATCCAGATGCAAGGAATTTGAAATTACTTCATGAGGAATCAACCAAGAATCATCATCATGAGGAAGTGGTCTCAGCACCTGTCGCCGACCCAAAGGTTGTAGTGAAAAACCAAACATCAACTGTGGTGGATAATGCACAGCGGGTGAAAGTGTTTATGTGTATTCCCTGCGGCATTGGATTCTCATCGAGATCGACATTGGAAGCACATCAAGCATACTATTGTTCCCACAGAAAAGAAGCAGAAGAAGATCCAGCTGGAGGAGGCGCCGGTAGTGCTTCATCAGGCGATAAGAATTCCACCATAACATCGGGTGAGCCATCAGCTAAATCCATTAAGACTGGCAAGCAATACGCTTGCACACAGTGCTCCTACAGTGCCGACAAAAAGGTCTCGTTAAATCGTCACATGCGTATGCACCAAAGCTCACCGGCGCCAAGTTCGAACGCCTCGAATGGTGGCGATGATAGTTCTAGTCAACAAATCGATCGTTACTGCTCTGAATGTGATATTAGATTCTCGAATGTGAAAACGTATCGGGCACATAAGCAACACTACTGTAGTTCCAGGCGCAATGATGGccAAACGACACCAAAACTAGCAGAACCAAGTTTGAAAACTAGTGGTGGCTCAGTTAGTCCACCGCAGGCGCGAACGAAAACACCAACACCAGCCGCTGTGGTAGCAGCTGCAGCGGCAGCAGCGGCCGCCGTAACACCACAACCATTTATTGCACTACCGACGAATCCCATTCTTATTATTCCATATTACTTGGTACGAGCGGCCAGTATGATACCGGGACCATTaacatcagtatcctcTGGGATTGCGAATCCGGAAAGTACATGTTTCTCACTAGAAAATGGATCTCTTAAGCCAATGGCCACAGCCTTAAGTACCAGTAGCATTACGAACAACCAAATTCCACATGTGGATACGGCAACACGATCACATCCTCCACCAGCAAGTACTTCAGCGAATAATGATTCTGGTATAGCAGCACCATTACTGACAGAGAAGAATGCACGTGCCGCGTCTGTGAATAGTTGCAGTGAATCTGTAAAGTCGAACAAAAAAGATGGCGCTGTGAGAGATTTTGCGCCTCTGGATCTTTCACTACGACGCTCTCCCATTCAAAGAGCACAGCGAGTCCGTTCGTCGTCTAGTTTCATGCCACCAGGTGACGAAAGAATCGATATCGAAAATATGATGGAGGGCAaagaaaatctatccattgataGTGGTAGCATGACACCTGAACAAATCGTATGTGCTCCATCTCTACCCAATAGTCCTTCCATGAGTCCATCGCCGAAGAGAAGAGCTCTCAGCCCCCGGAGTAGCAGTGCGGCTTCAATGTCACCAGTACCCCCATCGGTTATGGATCACTTACCACTGAGATCGATTCTTCCAGCTGATATTGCCATGAAATTGACTGAGTCGAATATAATTCCACCACTCATTGCCAAACAGAATCTAGAGTTGGCCTTCAAGTTATCTTCTGCATCAGCCGCAGCTGCTGCTGCAGCGGCTGCTGCGTGCAACAGTAAACAAAGTGAATCTGGAAAGGCGGCAATGAATAATTCACTTTTAGGACTTCCCGGTGCGCCTATTAGTGTGGGGGGAGCATCCAGCGGACAACCACAGATTTTTGTCAAACAGGGCGTATCGAAgtgtaaagaatgtaatatTGTGTTTTGCAAGTATGAGAACTACTTGGCCCATAAACAGCATTACTGTTCGGCTAGGAACCAAGAGGACACCGAAAATAAGATTAGTACTCCTCCATCAGCATCCAATTCAGGAGTGGAAACGAATCCAATCGCTTATCAGCAGTTGATCTGTGCAGCCTGTGGCATCAAATACACTTCGCTTGATAATTTGAGAGCACACCAGAAGTTCTATTGTCCCAAAGGTGGAGGTGACGGATCTTCAACTACACCGCAAGTCACAAAGGAAAAGTGTTCCAAGTGTAAGGTTCTGCATGAAATTGGCCAACCCTGCCCTCCAATAGCTGCAGTCGCACAACAACAAGGTTCCTACAAGTGTCCCGTTTGCGATGTCGTCAGCTTAACAGCTGCTGAAAATCGGAAACACCTCGAAACACATGGTAGTGTCAAGGCGTTTCGTTGTTCAATTTGTCGATACAAAGGAAATACATTACGTGGAATGAGAACACACATTCGGATGCATTTCGATAAGAAGACTTCTGACTTTAACGAAGAGAACTACATGTCATGCATTTTAGAAGATGATGGTTTGGAGATTCCTAGTCCAGCGACTCTAAATCAGGAGCAACTCTCACAATTCGCTGCTGCTgctcaacaacaacatcaacagcatCTGTTGCAACAACAGTCTTCGgcgcaacaacagcaacaacaacaacaacagcaacattcGCCACAGCACCCCCAGCAGATATTTAACTGTGAGATTTGCAACTACTCATCCTCATATAAGGGCAATGTGATGCGTCACATGAAACTGGTACACTCGCAACCTGGCACATCACCTTCGATTTCCCCCGAAATAATGATGGAAGAAGGTGAACCCGCCACTCATAGTTTAAACGGAGACAATGGTAGCAGTCTTCCAGAAGGttTTACCATAAAAACGGAACCATTAGATCCATCCGCTACTGCTACACTaactaaaaacaataataattccaccccaaatcatcatcatcatcacctgGAACCATTGGCGCAGATCAAATCAGAGCCAATGGAAATAACAGATGGCGTCATTCGATCTCTTCCGTCTCCATTATCAATTCCACCACCACCGCTTAATTCATCATCTCCTCTATCTGGAGATGAGAATTCATTGCTAAGAAATTCTTCTGCTTCAATTGGCGCTGGCGGATTGGTTCCCAATCAGAAATATTGTCAAACGTGCGATATCACttttaattatatgaaaacCTATCGAGCACATAAGCAGTTCTATTGTAAGAATAAAACTCGAGGAGATACAGACAGTCCGAGTCCGGTTCCCCCAGTAGTGCAATCACCCACATTGCTAAACAAGAACAAAGAGAACTTGGAAGCGACTATATTATAG
Protein Sequence: MCPEKDLAESETKDLSPSDLNEQADAASSADIDQSAEPRTPFTTESLMEDNRPSSSTPRTLSPPSEPEADDQHPLSVRTDLQSGANSPSEHDDSSIVPAVAVAAIPKLRLNALLASDPALNPDARNLKLLHEESTKNHHHEEVVSAPVADPKVVVKNQTSTVVDNAQRVKVFMCIPCGIGFSSRSTLEAHQAYYCSHRKEAEEDPAGGGAGSASSGDKNSTITSGEPSAKSIKTGKQYACTQCSYSADKKVSLNRHMRMHQSSPAPSSNASNGGDDSSSQQIDRYCSECDIRFSNVKTYRAHKQHYCSSRRNDGQTTPKLAEPSLKTSGGSVSPPQARTKTPTPAAVVAAAAAAAAAVTPQPFIALPTNPILIIPYYLVRAASMIPGPLTSVSSGIANPESTCFSLENGSLKPMATALSTSSITNNQIPHVDTATRSHPPPASTSANNDSGIAAPLLTEKNARAASVNSCSESVKSNKKDGAVRDFAPLDLSLRRSPIQRAQRVRSSSSFMPPGDERIDIENMMEGKENLSIDSGSMTPEQIVCAPSLPNSPSMSPSPKRRALSPRSSSAASMSPVPPSVMDHLPLRSILPADIAMKLTESNIIPPLIAKQNLELAFKLSSASAAAAAAAAAACNSKQSESGKAAMNNSLLGLPGAPISVGGASSGQPQIFVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEDTENKISTPPSASNSGVETNPIAYQQLICAACGIKYTSLDNLRAHQKFYCPKGGGDGSSTTPQVTKEKCSKCKVLHEIGQPCPPIAAVAQQQGSYKCPVCDVVSLTAAENRKHLETHGSVKAFRCSICRYKGNTLRGMRTHIRMHFDKKTSDFNEENYMSCILEDDGLEIPSPATLNQEQLSQFAAAAQQQHQQHLLQQQSSAQQQQQQQQQQHSPQHPQQIFNCEICNYSSSYKGNVMRHMKLVHSQPGTSPSISPEIMMEEGEPATHSLNGDNGSSLPEGFTIKTEPLDPSATATLTKNNNNSTPNHHHHHLEPLAQIKSEPMEITDGVIRSLPSPLSIPPPPLNSSSPLSGDENSLLRNSSASIGAGGLVPNQKYCQTCDITFNYMKTYRAHKQFYCKNKTRGDTDSPSPVPPVVQSPTLLNKNKENLEATIL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01223805;
90% Identity: iTF_01223805;
80% Identity: -