Basic Information

Insect: Xylota sylvarum
Gene Symbol: -
Assembly: GCA_905220385.1
Location: LR999957.1:138588827-138598734[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.26 31 5.9 0.0 2 23 310 332 309 332 0.89

2 6 0.00042 0.051 14.6 0.9 1 23 343 366 343 366 0.92

3 6 0.00018 0.022 15.8 2.7 1 23 376 398 376 398 0.97

4 6 2.1e-06 0.00025 21.9 2.1 1 23 546 568 546 568 0.97

5 6 2.6e-06 0.00032 21.6 0.2 1 23 574 596 574 596 0.98

6 6 1.2e-05 0.0014 19.5 4.2 1 23 602 624 602 624 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.26	31	5.9	0.0	2	23	310	332	309	332	0.89
2	6	0.00042	0.051	14.6	0.9	1	23	343	366	343	366	0.92
3	6	0.00018	0.022	15.8	2.7	1	23	376	398	376	398	0.97
4	6	2.1e-06	0.00025	21.9	2.1	1	23	546	568	546	568	0.97
5	6	2.6e-06	0.00032	21.6	0.2	1	23	574	596	574	596	0.98
6	6	1.2e-05	0.0014	19.5	4.2	1	23	602	624	602	624	0.98

Sequence Information

Coding Sequence: ATGAACAAGATTGACACGGAACATATTATACCAAATTTTGTTCGATCGATTACAACTCATCCAGCTAGCAGATGTCCGACACCCTTTGCTTTCCCTTTTACGCCACTTGGTCTAAGTCTATTCGATACAGATCCGTCCAGAATACTTAGCATGCTACATCATCAGACGCTATTAGCGGAGGAAGCTTTGAGatATCGAGGTCTTCTGTTCGCTCCCAAAGATCATCCGCTTCGTTTTAACTCAATAAGTGATATACTCCCAAAAGACCACCAGGAACTAATGTCCAAACGTTCACCAGCAACAATGTACAAACaaacgaataataataatagtaaccACAATAATCGCTATCCGTCGGCTATAAGCATTtaccaacatcatcagcatcaccaccaccaccagcagcagcaattTCATCACCAAAAACTACAGCAGCGTGATGTATCGCCAATGGCAACGACCACCACGGCAACACCATCGCCACAACATCAGTACACAAAGGACACCCTGCTCGAAGAACTAAAACGTAAGTCCGAAGAAACCGTCCAAAGGGAAGAGGAAGAGATCGAGATGCTAGAAAATGGTGGCGGCAGCAGCGGCTTAAGTGGCAGCTCTGGCCTTCTAAGTGGActcggtggcggtggcggtctAACGTCCAAAGAAACTCTCGGTCAATATTTACGCCGTCGTTCGAGTTCATCGCTGGCCGATGGATTACGCTATGGCGCCGGTCATTTGTCGAGTACCGAAACGTCCAGTTGCAAGGAGAAAAGTTCCTCATCATCTACCTCGTCGACACCGCCGCCCCTATTACAGCCACCGCCATCAACGTCCTCATCATCGTCCACATCCACCTCATCGACAGCCGCTCATCTTAAGTCGCTGGCCGACGCTGCACTCTTCTCTGAGCCCATCGAGGAGGAGACCCGTTGTGTGGTGTGTAATGCTAATTTTCCGAATGTATGGCTGCTCGAACAGCATGCTGCCTTGCAACACGCGAATATGGGTCCGAACGATGAGAAACCATTCATTTGTGAACAATGTGGGCAGTCGTATCGCTATCGGTCGGCTTATGCCAAGCATAAAGAGCAGAATCATAGAGCACGATTGCCAGCGGATAAACTTTTCACATGCGATGTCTGTGGCATGCAGTTTCGATATTTAAAATCGTTTAAGAAGCATCGATTGAATCATGCTCTAGAACGACTGCATGGCAAGAAAGAACGAAAGAATGTGGATAGTAGCCAGGATGTGGTAACCAGCTCGAATGAAAATGTACCCGATGAGGGATGTGACCTAAGAATCAACATAAAGCGtgaaaatgaagaagaagaacaggATAATACGATTGATTCAGCTGGTGGGCTTTTCCACGACACCACTGGAAGCCACATGGTGGAGCAGAATATAACCAGCTCCGAAGGAATTCATAGTACAAATAAAAGGCCTCGTCTTATTTCGCCCATTGAATCGGAACCCTCCCACCCGACGACATCGATCAATAGCCTCATCAACGCCGAGCGCATTCCAAGTGAACAATTTCTTGGGCTCAACCCACAGGAAGCgtccattttgaattttttgcgtGTAGATGCAGCTGAGAGGCAGCGTGATAAACGcCCACAATCATCTCGTTTCGCCTGTCCATTCTGTGGCAAGTGTGTCCGCTCTAAGGAGAATCTAAAGCTGCACGTTCGCAAACACACTGGCGAGCGGCCATTCGTTTGCCTGTTTTGTGGTCGTGCATTTGGCGGAAAGTCCGATTTAACTCGCCATCTTCGAATTCACACCGGCGAACGCCCATACCACTGTGAGTCATGTGGTAAGTGCTTCGCTCGAGCTGACTACCTCTCTAAGCATCTGACAACACACATTCACAATGCGCCTCGCTGA
Protein Sequence: MNKIDTEHIIPNFVRSITTHPASRCPTPFAFPFTPLGLSLFDTDPSRILSMLHHQTLLAEEALRYRGLLFAPKDHPLRFNSISDILPKDHQELMSKRSPATMYKQTNNNNSNHNNRYPSAISIYQHHQHHHHHQQQQFHHQKLQQRDVSPMATTTTATPSPQHQYTKDTLLEELKRKSEETVQREEEEIEMLENGGGSSGLSGSSGLLSGLGGGGGLTSKETLGQYLRRRSSSSLADGLRYGAGHLSSTETSSCKEKSSSSSTSSTPPPLLQPPPSTSSSSSTSTSSTAAHLKSLADAALFSEPIEEETRCVVCNANFPNVWLLEQHAALQHANMGPNDEKPFICEQCGQSYRYRSAYAKHKEQNHRARLPADKLFTCDVCGMQFRYLKSFKKHRLNHALERLHGKKERKNVDSSQDVVTSSNENVPDEGCDLRINIKRENEEEEQDNTIDSAGGLFHDTTGSHMVEQNITSSEGIHSTNKRPRLISPIESEPSHPTTSINSLINAERIPSEQFLGLNPQEASILNFLRVDAAERQRDKRPQSSRFACPFCGKCVRSKENLKLHVRKHTGERPFVCLFCGRAFGGKSDLTRHLRIHTGERPYHCESCGKCFARADYLSKHLTTHIHNAPR*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00426676;
90% Identity: iTF_01541735;
80% Identity: -