Xsyl023923.1
Basic Information
- Insect
- Xylota sylvarum
- Gene Symbol
- prdm10
- Assembly
- GCA_905220385.1
- Location
- LR999960.1:67482622-67486746[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00016 0.02 15.9 0.4 2 23 501 522 500 522 0.96 2 11 0.0004 0.048 14.7 1.3 2 23 555 576 554 576 0.96 3 11 0.0012 0.14 13.3 3.6 1 23 597 619 597 619 0.97 4 11 0.00036 0.043 14.9 5.1 1 23 627 649 627 649 0.98 5 11 0.0032 0.38 11.9 1.5 1 23 654 676 654 676 0.96 6 11 1.2 1.4e+02 3.8 6.2 1 23 682 705 682 705 0.95 7 11 0.024 2.9 9.1 2.3 1 23 710 732 710 732 0.98 8 11 4.6e-06 0.00055 20.8 1.8 2 23 739 761 738 761 0.97 9 11 4.3e-05 0.0052 17.8 0.8 1 23 815 838 815 838 0.96 10 11 0.0015 0.19 12.9 0.9 1 23 860 883 860 883 0.97 11 11 0.018 2.2 9.5 0.9 2 23 915 937 914 937 0.97
Sequence Information
- Coding Sequence
- ATGACTGAAAATTTAGACAATTCAGaaaatccaCTGGAAGCCGATGGTCAATACACTTATGGAGGATTCCAAAGAATTAGTTCATACGATCCGAATATGTGTTCAACTGCGGCCCGTTTTAGTCCTTTTTATGGCAAGAGCAATGCAACTCATCCCaagaagaacactgaaatgacaTGCAAAAATCCTATCTATGTCCAATCAACCAGTGTGGTTTCGCACGATGTCGATTCCTCCAATAACTTGAATCAGACTGATGTTGCGTCTAAAACCGTAGATCAGTCCTACCTGACGTACAATAATGAGATGCTAGTTCCACAACACCATGCTGGCACCGAAGTGTTTGTGGAAAATCAAATAGAAAACCCAGTTACATTCAATGATAAAGAACATGAAGCTTCGGTTCTCTGCGATGGCGTTGGGATCGACTACATCCAACATATTGATCAGGGCATTGATGAAGTAACCGGAGAACGCATAACTGCTGGTATCGTTTTGCATCGTTCACCGAATGGGCATTTGTACCAAAATTACTACGTAGCAAATGAAGATGGAACACCAGGCGAAATTGTCGAGCTAGTTCCAATTGATCCTAACGATGCCAATCGCTTGGCGGAGATTGAGGAGGATAGCTATGCAATGCAACCGTATGAATTCCCGGTCGAATGCAATATGGAAGCACTTGAAGCACATTTGCATAACGAAAGTGAACAGATGAGTGCAGTAGAAGTTGAAGAAAACCAGAAGAATATCATAGCAGCCCAAATGCTAGAGAGGGAGCAACAGAGAATTTTGTTAGAAAGCACAATGTCACCATTGCtGGCTGCGGTGAATGATATTACCCAAAGAGACGCGGAGCTGCTTTCATATCTCAATCAGCACGTTGAAAAGGAGCAAGTGATTGAAGAGAGTGTTCACGAAGAGGATGACTTCAGTAAGGATTTAAGAAAGCAAAAAAGGAGAGATTTTTctgaagacgacgacgacgacgacgacgactataTTCTCGTTTCAGACAAACCCGTTGAGAGCCGTGCGAGAGCTACTCTTCCCACAAACTATCTTTACCTTGGAGTTGTGAATGCTGACACAAATGAGCCATCAGTGTATGCCAAGAAAACGATTCCACAGAGAACAAAATTCGGACCCGTCGAAGGAGAAATCCGGTTCACTAGCgacatatatttaaatattttacgtTCCCAACATCCGCGGCACTACCCGCTTTTATTAGCCGGTAAAACAAGAGTTCTTATTGTTACTAATGAAAACACATCTAATTGGATGCGCTTTGTTCGCCTCGCCCAATCGTATGCTGAACAGAATTTGCAATTAATCGAAGAAGGTGATCGAATCTATTTCAAATGCAATCGTAATATTTATCCCAAAGAAGAACTTCGAGTTGGTTATCACAACACCTACGCAGAGAAATACAATTTACCAATTTTAGAGCCATCCATGGAAGACAATCAGAAGAAATACGAACAGAATAATCCTTGGAAGTGTTTTGAATGCGATCAAAGGTTTCCGACTTCACAAGATATGCAGAAGCATTTGGAGATTCATGATGTGGAAGATGCTTCTTGTATCATATCGAAGAGGAAAATCAAACGAAAgcgaaaaattattaataaactgTTGGAGTTGCCTAAAAATTCTAGCAGATGCTTGATTTGCTTTAAAGTATTTATGACGAACGAAAGTCTTAGAAAGCATTTCGCCACACATTTGCCTGCAAGGAAATCAAAAGTTAAGGTTACGGCAAAAAAGCTGTCAGAGCGTTCTCTTCATAAGTGTCAGTTATGTTTAAAGAAATTTGCATCACAGGAGAAACTAAAGtcCCACCAGGAAAACCATTCGGGCGAGAAAGAAAAACCACATAAATGCTCACATTGTGATCAGCATTGTGCCACACCAACAGCCCTAGCGGCCCATATCCGAAGTCACACAAATCGCCTTTATTCGTGTGTCTATTGCCAACAAACTTTCAAATATGTGATGGACTTTAAGAAGCATGTCATCCTGCACTCTACAGATGGAATTTATTCCTGTATTCACTGCAAAAAGAAATACAAAGAATATCATTTGGTTCGAAAGCATGTTCGAATATTCCATCCAGCAGTGAAGTATCCCTGCAATGAATGCGACCGTTTATTCCTTCATATGAGTTTTTTACGTCGTCACAAGGCAACACATGCTAAAAAAGCAGCTCTGCAGTGCTCTGAGTGTGAGAAACAATTCAGAAATAAGCAAGAACTGaaacaacatttaaaaactcttcataaaggcaaaagaaaaaaggaaaaaaaggaagtcataaaagaaaaaaatcctgaGAACGACGAAGACTCTCAGAACCTTAAACGTACACCGAAGAAGGAAAATTTGTCAACTCCCCCTAAAATAAATCCTACATCCGCCGATGATTACCGGCAGTATCAGTTCAAATGTGACGATTGTAAATTGGGTTTCAAGCGACGTGGTATGTTAGTCAATCACATGGTGAAAAGGCACCCGGAGCGTAACATCAATTCCATTGAGGAATTAAATCAACCGATTATAAAGCTGCAGACTGTCTACAATTGTTTGTATTgtccaaaaatttataaaaataatgcaaaacgAAAGGCgcacattttaaaaaatcaccCTGGCATGGAAGTTCCTCCATCTTTTCGCAGTAATCCAATTTTAAATGACGCTAATGTTCAAACTGTCGGCTGTATAAAGGCAGACGTGCAAAAGTGTCAATTGTGTTATAAGCAATATGCATCACGAACTCGCCTTCTTATACATTACCGTATGGCCCATAAAAACGAAAGGGTACCAGAAATTCCGATTGCAGTATCACCTCCGacacaaattttaattgaagaGCAATGCACGGAACCGGTAATGGATGTTTATAGACCACCGGTGTCACCAGAAAATAAACTTCTGAAGTTGTCCTCTGCTGCTCTTGAATTGTCCAGCCTCGAAGATAGGAAGtacttatattttttgaatgaaCGGTCTGATACAACAGATATCGCTGAGAGCAATAGAAGTAACTACAAAATAGTGGAAAGTGAATTTGGAGAGACTTCATCAAATACGGAATTGAATCGATTACCTGAGCTGTTTGATGAGTCAATAGCGTGtatttaa
- Protein Sequence
- MTENLDNSENPLEADGQYTYGGFQRISSYDPNMCSTAARFSPFYGKSNATHPKKNTEMTCKNPIYVQSTSVVSHDVDSSNNLNQTDVASKTVDQSYLTYNNEMLVPQHHAGTEVFVENQIENPVTFNDKEHEASVLCDGVGIDYIQHIDQGIDEVTGERITAGIVLHRSPNGHLYQNYYVANEDGTPGEIVELVPIDPNDANRLAEIEEDSYAMQPYEFPVECNMEALEAHLHNESEQMSAVEVEENQKNIIAAQMLEREQQRILLESTMSPLLAAVNDITQRDAELLSYLNQHVEKEQVIEESVHEEDDFSKDLRKQKRRDFSEDDDDDDDDYILVSDKPVESRARATLPTNYLYLGVVNADTNEPSVYAKKTIPQRTKFGPVEGEIRFTSDIYLNILRSQHPRHYPLLLAGKTRVLIVTNENTSNWMRFVRLAQSYAEQNLQLIEEGDRIYFKCNRNIYPKEELRVGYHNTYAEKYNLPILEPSMEDNQKKYEQNNPWKCFECDQRFPTSQDMQKHLEIHDVEDASCIISKRKIKRKRKIINKLLELPKNSSRCLICFKVFMTNESLRKHFATHLPARKSKVKVTAKKLSERSLHKCQLCLKKFASQEKLKSHQENHSGEKEKPHKCSHCDQHCATPTALAAHIRSHTNRLYSCVYCQQTFKYVMDFKKHVILHSTDGIYSCIHCKKKYKEYHLVRKHVRIFHPAVKYPCNECDRLFLHMSFLRRHKATHAKKAALQCSECEKQFRNKQELKQHLKTLHKGKRKKEKKEVIKEKNPENDEDSQNLKRTPKKENLSTPPKINPTSADDYRQYQFKCDDCKLGFKRRGMLVNHMVKRHPERNINSIEELNQPIIKLQTVYNCLYCPKIYKNNAKRKAHILKNHPGMEVPPSFRSNPILNDANVQTVGCIKADVQKCQLCYKQYASRTRLLIHYRMAHKNERVPEIPIAVSPPTQILIEEQCTEPVMDVYRPPVSPENKLLKLSSAALELSSLEDRKYLYFLNERSDTTDIAESNRSNYKIVESEFGETSSNTELNRLPELFDESIACI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01541696;
- 90% Identity
- -
- 80% Identity
- -