Xsyl006876.1
Basic Information
- Insect
- Xylota sylvarum
- Gene Symbol
- -
- Assembly
- GCA_905220385.1
- Location
- LR999957.1:94235477-94239440[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.5 3.1e+02 2.7 0.0 2 21 90 109 89 110 0.92 2 11 0.015 1.8 9.7 0.2 1 23 116 138 116 138 0.95 3 11 0.0014 0.17 13.0 0.6 1 23 174 196 174 196 0.97 4 11 1.5e-05 0.0018 19.2 0.9 1 21 201 221 201 222 0.93 5 11 0.0014 0.16 13.1 0.8 2 23 513 535 512 535 0.95 6 11 0.12 15 6.9 1.1 2 23 582 604 581 604 0.92 7 11 3.2e-05 0.0039 18.2 1.4 1 21 614 634 614 635 0.96 8 11 3.4e-05 0.0041 18.1 0.9 3 23 645 665 643 665 0.96 9 11 2e-05 0.0024 18.8 6.6 1 23 671 693 671 693 0.98 10 11 7.6e-06 0.00091 20.1 1.8 1 23 699 721 699 721 0.98 11 11 0.37 44 5.4 2.7 1 22 727 748 727 748 0.93
Sequence Information
- Coding Sequence
- ATGGCGACCCCAGACATTGTAATAAAAACTGAACCCATTGATGAGGATTATTCTGTAATTAAGCAGGAAGAACTTATTATAAAGCCTGAACTGGACGATGAATCTTCACAACACACACAAGTATTGGAAGGTGAATTACTAAACTCTTTCGATTTGTTAATTCCAAAGGATGAACCAGTAGATGATGAATACCTCAATGAAAACAATTCCCCCCCGAAAGATGATGAACATAAAAAAGATTCTAAAGCATCATCTGCTGACCTGATGCAATGCGAAGACTGCAAAGGATATTTCGTCGGAGTAAGAGGTCTTGCGACTCACAGACGCTTGAGATGTCGTAATAATTATATTTGCACCATCTGCGGGCAGGTGTTTCTAACGAATttgattttacaagaacatctgCGAAGACATAAACAAAAGAGCTCTCCAAGCAAAGAAACGAAAACAACACCTACGACTCGACGTTCCCAACCCAAGTTGGCTAAAACGTCGACACCTGACCCAGAAGAGGTACTATTTGCTTGCAATACATGCGAATTGACGTTCAGGAATGGCCAAAGTTTAATGAACCATAATCGAATTCATGGGGGAATAAAACACATCTGCAACCAGTGTGGTAAATCTTTTAAATATGCTGTTAATTTAAGGACACATAAGAAAGGGGACACGTGTGTAAGGGAATCTATAGCGGATGTTTTAAGAGATAATGGGAGTGATATTAATATTAAGGAAGAAGCGCAAAGTGAGGACGGTGAAGATGAAACCTTGACTGATCAGTTGTTAGTAGGATCAACTATTATCTCCAAGGTTGATTCTCCTACAAATCAAGAAGTTATCACTGCCGCCCAGTGTAAcagttttgaaatcaaaaaagaagAGATTATCACCGATGACATTATACCAGCAGTTTCAATCAAGGAAGAACCTGTTAATAGTGAGGAAAACTCCAATGATGCCCAAGGTTTTGACGACCTGATTCTACAAGAGCTTATCGATCGTAAAGCTAAATCCAttgcaaaagaaagaaaagccaTAAAACGACCGTTGCCACCTGTGGAAGAAAAATACGTCAGGCAAATAAAAGTTTATCGTCAAAAGAAAAAACGTTCGTTAGAAAATACAGACTTTGAAGAAGTTATATCATCAAATACTCTTTCCCTGGAGATTACCAAGCCAGGAATAGATCCACCCACGTTGAAAACAGAATTTCTAAAAGTTGAGCCCGCATTTTTAGATGAATCTCCACAAGTCGAGTTGCGTCATGTAGACGATTTTGAGGTGTTGATAATATCGAATACGCTTCCGaattatcaaaacaaaactggAGTTATAGAGAGTCTAAAGGAGGAGTACctgaaagcaaaaaagaaaaaattagacgAAGTCTCAACAGATGAGAGTAGTCAGCATTCATCGTCAGTAGCAACTGCGGATGTGGCAGCACCAAGTTCAATGTTTTTTTCGGTAATGGGAAACCCTGAGCCGTACAATGAAGTTGTTCGTAAGTTAGATAAAAACTATCGCTATACATGGATTTGTCCTTCATGTCCGCGACGATACGTTCAACGTCATGCATTCGTAAAACATCTCAAAAGTTCGCATTTTAAGGAAAAGAATGACATCGACAACGTGCTGTATGAACTAAGACCTGAGCTCTTTTATCCAAATACAAGTGGTAAGTCTATGAAATTCTCTTGTGTGAACGGTATGATAACATTAATTTCATTAGCGGAAGATACATATTGCAATTTATGCCGTGTAACCCTCGCCGATGCTGCAACGCTACGAAAGCATAGACACGAGTTTCATAAGGAGGATCATACCACAAAGATGCAGTTCAAATGCGATAAGTGTGGAAAGTTCTGTTCAACACGCAGTTCGCTGGTGGATCATGTGCGTGCGAATTGTGGTACAGAACCTCAATATGGATGCGCTGTGTGCGGAAAGAAGTTCTATACGAAGAGTACGTTAAATTTGCATAGAACTATGCATACGGGTGAGCTGCCACACGAGTGCTGCTACTGTGAAAAGCGATTCCGAACGAAGGGTCAATTGACGGTACACACAAGAACTCATACCGGCGAGAGACCTTTCCCTTGTAAGGTCTGTGAGAAACGCTTTACACACCGTGAAACGCTGATCGCCCACCTCTCACGACACATCGACATGAAGCGCTATAAATGCTACGGCTGTCAACAGTTCTTCTCTTGCATTTCCGGACTCAAAACCCATCGGCTTACACGCTTGGCCACTTGCGGTAAATTCAAACTCAACGCTCGGCCGGTGGGCCCACGAGTCCGGGTGATCAAAGGTAACGTAATCTTTGAGCCACAACCAAAAATCAATCCCTACTACCGACGAGAGGCAGACGATTGTGATGAAAATACGAAGAAAAACGGTAATTTTCAAGAAAACGCACAGAACCAGGAAAACATCATCGATCACATTAAGATCGAACCCACTTCTGTGGCAGGAGAGAGCTAA
- Protein Sequence
- MATPDIVIKTEPIDEDYSVIKQEELIIKPELDDESSQHTQVLEGELLNSFDLLIPKDEPVDDEYLNENNSPPKDDEHKKDSKASSADLMQCEDCKGYFVGVRGLATHRRLRCRNNYICTICGQVFLTNLILQEHLRRHKQKSSPSKETKTTPTTRRSQPKLAKTSTPDPEEVLFACNTCELTFRNGQSLMNHNRIHGGIKHICNQCGKSFKYAVNLRTHKKGDTCVRESIADVLRDNGSDINIKEEAQSEDGEDETLTDQLLVGSTIISKVDSPTNQEVITAAQCNSFEIKKEEIITDDIIPAVSIKEEPVNSEENSNDAQGFDDLILQELIDRKAKSIAKERKAIKRPLPPVEEKYVRQIKVYRQKKKRSLENTDFEEVISSNTLSLEITKPGIDPPTLKTEFLKVEPAFLDESPQVELRHVDDFEVLIISNTLPNYQNKTGVIESLKEEYLKAKKKKLDEVSTDESSQHSSSVATADVAAPSSMFFSVMGNPEPYNEVVRKLDKNYRYTWICPSCPRRYVQRHAFVKHLKSSHFKEKNDIDNVLYELRPELFYPNTSGKSMKFSCVNGMITLISLAEDTYCNLCRVTLADAATLRKHRHEFHKEDHTTKMQFKCDKCGKFCSTRSSLVDHVRANCGTEPQYGCAVCGKKFYTKSTLNLHRTMHTGELPHECCYCEKRFRTKGQLTVHTRTHTGERPFPCKVCEKRFTHRETLIAHLSRHIDMKRYKCYGCQQFFSCISGLKTHRLTRLATCGKFKLNARPVGPRVRVIKGNVIFEPQPKINPYYRREADDCDENTKKNGNFQENAQNQENIIDHIKIEPTSVAGES*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -