Basic Information

Insect: Xylota sylvarum
Gene Symbol: prg
Assembly: GCA_905220385.1
Location: LR999957.1:61408577-61410710[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.3 1.5e+02 3.7 0.9 1 13 189 201 189 211 0.76

2 9 0.099 12 7.2 0.5 1 23 217 240 217 240 0.95

3 9 2.9e-06 0.00035 21.5 2.0 1 23 246 268 246 268 0.97

4 9 3e-09 3.6e-07 30.8 1.6 1 23 274 296 274 296 0.98

5 9 1.3e-07 1.5e-05 25.7 2.0 1 23 302 324 302 324 0.98

6 9 0.002 0.24 12.5 4.4 1 23 330 352 330 352 0.95

7 9 1.2e-05 0.0015 19.5 3.5 1 23 446 468 446 468 0.95

8 9 1.5e-06 0.00018 22.3 3.7 1 23 473 495 473 496 0.95

9 9 1.9e-05 0.0022 18.9 0.5 1 23 500 522 500 522 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.3	1.5e+02	3.7	0.9	1	13	189	201	189	211	0.76
2	9	0.099	12	7.2	0.5	1	23	217	240	217	240	0.95
3	9	2.9e-06	0.00035	21.5	2.0	1	23	246	268	246	268	0.97
4	9	3e-09	3.6e-07	30.8	1.6	1	23	274	296	274	296	0.98
5	9	1.3e-07	1.5e-05	25.7	2.0	1	23	302	324	302	324	0.98
6	9	0.002	0.24	12.5	4.4	1	23	330	352	330	352	0.95
7	9	1.2e-05	0.0015	19.5	3.5	1	23	446	468	446	468	0.95
8	9	1.5e-06	0.00018	22.3	3.7	1	23	473	495	473	496	0.95
9	9	1.9e-05	0.0022	18.9	0.5	1	23	500	522	500	522	0.98

Sequence Information

Coding Sequence: ATGAAACGAGTTAAAATGGTTCGAATGCAACACAAGTTAAGTTTAGATTGGATAAATTTTGAAGATAAGACGATAATGAAAAGGGAGCTGAAACTTCGTCAACTAACTATAataGAAAAACAAGATGGATTGccgaaaaatatttgtcaccGCTGTTTATATCTTACGGAATCATTTTTTGCATTTCGTGAAAACGTTAAGCTCTGTGAAGTTCAGCTGCGAACTCATGCAGATGAAATGAGAGTGAAAGGTGGTGAACTGAAAGCTAACAATATGAAGCAAGAAAATTCCGATAATCGTTACGAGGGAATGAATGGTTTTCACGGCTTTGTACCAGATGAAAACTGCGAAATTACTGTCGTCGACCCAAACCAGGAGTATGAAAGTTCTGATGATTGTTTTTCAATGGATGATTCCGATACCGAATGTCCCAGAAACAAATGCATTAATGGTTTGATTCCACGGCCTGAGGGAATACAAAATGAAAGCGAAGTAAAACCTGAAAGCGTTGCCCAGACATTACCACAGAATTCAGGAGAAATCTCATGTGAACCGAAAAATACTTTTCTTTGCCAATACTGTGACATGGCGTTTACGGCACAAATGGACTGCGATGAACATGAATCCCGCCACGATGCAGCCAATCCttttatatgtaatttttgTCCGTTCCGCACAGTTAACAGACAAGTTCTTATTTACCACATAAAGGAATCGCACGATAACGAGCGTCCCTATGTCTGTGCCTTGTGTAACAAAGGCTTCTGCCGTCGATCTGATCTAAAGAAACACACAATAGTACATACCGGCGTCCGACCGTTTTCATGCCCTGTGTGCTCAAAGAGTTTCTCTCGCAATACAAATCTTACGAAACACATGAGAATCCATAGCGGTGTCAAACCACATGTATGCCAAAAGTGCCCACGATCATTTACTACATCCGCAGATCTTGTACGCCATCAACGAACTCATATGGAAGTAAAACCCCACAAGTGTATAAAATGCTCAGCTTCGTTCACTCGGAAggataaattacaaaaacactACCTCTCACACTTAAGGAAAGAATCTGAATTAATTTCGTTCAATGGAGAATCTCAAAAATCACCGTCTGAAAATATAGTAATTCCACTCAATCCATTCGTTGAAATAAAGCAGGAGAAAAATGAGAACCAGCGTGAGGTACAAGTGGGATACAATCCAGTCGGAACGTTTGCTTCAAAAGAAGCATCCAGTTTTGGGAATAGTTTACTAGCTGCCCAATTACAGAGACCTCAGGCTGCGATGCAAATTCGTAACAATCAGCCAATAGTGCCAAAATCGAATGTGAAAGTTCACATTTGCAATATCTGTTCTAGGACTTTTACAAGGAAAAGGGAATTCCAACGCCATCAAGCTCTTCATTTAGACAGTTTGTATAAATGTAAGGTATGCGGTAAGAACTTCAACCGAAAGGATAAACTGTTTCGCCATGAAGAAATTCATCACGCAGAACAATACAACTGTAATCAATGCAATATTAGTTTTTCGAAATTGGAAGCACTTCAAATGCATCTTAAAATCCATGAACTTCATAAATCTGTACCTAAGGTAGAAGGTGGTTTACCTTACTTTGGTCATATGCAGGAACCACCTCCCATGGCCCTCGGGTTTTATAGTGAAATCAAACCCGAAGAATGA
Protein Sequence: MKRVKMVRMQHKLSLDWINFEDKTIMKRELKLRQLTIIEKQDGLPKNICHRCLYLTESFFAFRENVKLCEVQLRTHADEMRVKGGELKANNMKQENSDNRYEGMNGFHGFVPDENCEITVVDPNQEYESSDDCFSMDDSDTECPRNKCINGLIPRPEGIQNESEVKPESVAQTLPQNSGEISCEPKNTFLCQYCDMAFTAQMDCDEHESRHDAANPFICNFCPFRTVNRQVLIYHIKESHDNERPYVCALCNKGFCRRSDLKKHTIVHTGVRPFSCPVCSKSFSRNTNLTKHMRIHSGVKPHVCQKCPRSFTTSADLVRHQRTHMEVKPHKCIKCSASFTRKDKLQKHYLSHLRKESELISFNGESQKSPSENIVIPLNPFVEIKQEKNENQREVQVGYNPVGTFASKEASSFGNSLLAAQLQRPQAAMQIRNNQPIVPKSNVKVHICNICSRTFTRKREFQRHQALHLDSLYKCKVCGKNFNRKDKLFRHEEIHHAEQYNCNQCNISFSKLEALQMHLKIHELHKSVPKVEGGLPYFGHMQEPPPMALGFYSEIKPEE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00313702;
90% Identity: iTF_01541620;
80% Identity: -