Xsyl016714.1
Basic Information
- Insect
- Xylota sylvarum
- Gene Symbol
- -
- Assembly
- GCA_905220385.1
- Location
- LR999959.1:19339117-19349981[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1 1.2e+02 4.0 1.9 1 23 174 197 174 197 0.96 2 19 0.00039 0.047 14.7 0.9 1 23 233 255 233 255 0.97 3 19 0.00084 0.1 13.7 4.9 1 23 260 282 260 283 0.95 4 19 0.3 36 5.7 0.2 1 21 288 308 288 309 0.93 5 19 0.094 11 7.3 0.6 1 23 518 540 518 540 0.97 6 19 0.00041 0.05 14.7 1.1 1 23 545 567 545 567 0.99 7 19 0.22 27 6.1 1.0 1 11 573 583 573 586 0.92 8 19 0.00052 0.063 14.4 1.7 1 23 700 723 700 723 0.98 9 19 0.00015 0.018 16.0 1.4 1 21 729 749 729 750 0.94 10 19 4.3 5.1e+02 2.0 2.0 1 23 789 811 789 811 0.95 11 19 1.1e-05 0.0014 19.6 0.7 2 23 816 837 815 837 0.97 12 19 0.00076 0.091 13.8 1.1 1 23 843 865 843 865 0.98 13 19 0.00055 0.066 14.3 1.1 1 23 871 893 871 893 0.98 14 19 0.35 42 5.5 0.6 1 23 1117 1142 1117 1142 0.95 15 19 0.0072 0.86 10.8 0.2 1 23 1149 1171 1149 1171 0.98 16 19 5.2e-05 0.0063 17.5 0.3 1 23 1176 1198 1176 1198 0.99 17 19 5.4e-07 6.5e-05 23.8 1.3 1 23 1204 1226 1204 1226 0.99 18 19 0.0054 0.65 11.2 1.7 1 23 1232 1254 1232 1254 0.96 19 19 0.0004 0.048 14.7 0.9 2 21 1261 1280 1260 1281 0.94
Sequence Information
- Coding Sequence
- atgaaagaagaaaatacgTTTTCCAATACTACACAAACTTCCTGTTCAAGTAAAGTAAATACTGCAGTAAAAAATGTCGACTTCTCAAATACATGTCGCACCTGCCTTCGGGGAATTACCGACGACAATTTTTACTTAATTGACGAGTCGATAAACTCTATTATTGAAGCATCAGCCGGAGTGCAAGTACTTAAGAAACATCAGGACAATCTACCACAACAAATTTGCAATGTGTGTCTCAAAGCGCTTCATTTTGCTTACGCCTTCCGACAGGAGTGCCAGAAAGTTGATGCGCTTTTGAAAAGTTATGCACAAGAAAAGGAGCCGCACGCCAGCAAATCATCTACATATGCGTCTGAAAGTGAGGGTGAAGAACATAACGAAAGCCCAGGAAGTCAACTTGAAGTTATAAATCCACtggaagatgaagatgaatcaattgaataTGGCAATGATTCCTTGGAAGATAAAGAATTTACTGAAGATTCGCACGgaacaaaagagaaaagaagGTGGGGTTTCATTTGTAGTCTCTGTGGCTCGGTATGCGCAAACATTCACGCTATCATACATCACTATATCACACAACACATTAGTGAAAATGATCCCAATCAGTGTCCTCTTTGCAGTTACAAACTGAAACAAAACAATGCTTTGCGTTTACGCAATCACATACTAACACACGTTAGTAACGCGTATGAGTGCCAGTACTGTAATGCACAGTACAAAACGGCATTTGGGCTAAAACGACATTTGGTTCGTCATACCGGTGTTCGTCATAGATGTACTCTTTGTACCAATACTTACACGCGACAGGATGCGCTAAAGAAACACTTAGAAATGCATCACAAAAGAAGTAAATATGAATGTATAGAATGTCACACCAATTTCTACGCAGCCGACACACTAAAGCTACATATTCAAAGCAAAGACAACATATGTGGACTTGGACCCAATGAAATTTCGCCTCCCAAAGACTTTTCACTAACTGAACAGAATAACTTGCCAGAAGAATCGGTTAACGTCGATGAAGCATTGAATAATGAATACAGGGAGATAAAACAAGTGATTCCTGTTATGGACGATTCTCTCCTTTCCAAAAACGAAACCTTGGAGGAATTTCAACATGGATTATCCACCAGTGACAGTTGCCTACCCGTAAAGCGTGAATTGATGGAAGATTCCCTTGCAACAGTCAACGAAACATTAGAAGGCAGATATGTTGTAAACGAACTACCAGAGGACCCAGTCGATGAATCGTCAATTTTCGAAAACCATTCCCTAACTATAAAAAGTGAGGCAATGGAAGATTCTCAAGTTGTAAGTGAAGCGGATGATGAACTTACTACTGAAGATCTTGAAGGATTAGACGAATATCCTcattcttcaaataaaaattccacattACTCGAAGATTCAGTTGAATTTATCAACAATCCATTGGAAGAAAATGATCCATCCTTCTCTTGTATCATCTGCAGCCGGAAATTCCAAATGTATCGTGACATCATTGATCACTATGTCGTTGACCACGACAAAGGCACTGCGGCTTTTACGTGTCCTTTCTGCAGTGAAGAATTATCAAATAAGTTTATTTTACGCACTCATCTGAAGGCACACATAACTCCAGAGTACAAATGCCAATACTGTGACGTACAGTACAAAGCGGCATTTATGCTAAGGCGACACTTGCTAACACATACCGGTGAACGACCTTTTTCGTGCACTCAAtgcaataaaacatttaaaATTAGTAATGAAGACAAGTTGCCTTATCAAATTTGCCATGAGTGCCAGAAGGTTGTGGATGCAGCATTTTCATTTCGTACCCAAGCACAGCGAATTGATGATGTACTGAAGCGATTCATAAAGAAAGTATACATCACCGCAGAGGAAACATCAACTGAACATGAAACAATTGTGGGCGCTGAAAAAATCGATGAACCAATTGCTATAGAAATCGACGGTTATGAAGTGTCTTTTGTTGGAGAAAAACCTGAAACTACTAGTTTTCCGTGCAATATGATTTCTTCAAATCGAGCGGAACCAGAAAATCACAACTCGGAACATGAGCCGTTagatataagaaaaaaactcTTTAAGTGTGGAATTTGCTCGAAAGAGTATAGTTTTCGAAATGGACTGCATAACCATCTAATGACTGCTCATGTACAAAAGAAGGAGTACCAATGCCCGGTGTGCGGGAAAATGTTTAAGAAAAGAGACAGATTTCTGCAGCATAAGAAAAGATTTTGTGTAGCTCCAGATGCAGTACCCAAGGTGGCGAAAGAAGCATGTGAAGTAACGATACATCCCATTGGAGAGTGGATGACTGCGGATAACTTTTATGTAGAGATCAGAAACTTCTCATGTTCGCTGTGCGATGGGaaatTTGAGCTAGAAACTGACTTTACGTGTCATATGCAAGAGCACTCAGCACTGAAAAGATGTCCTTACTGCAAAAAAATCTTTAATCGTGCAATTAGTTTAGAGAGCCACGTTCGGTCTCATACTAACGATAAACCTTTTGTTTGCCCACTGTGCACAAAAGGATTTTGTGCCCCACGAGCGTTTCGCAATCATCTCAAACTTCACACCGAGAGAAAAGCTTACGTCTGTAATACTTGCAGTAAAAAGTACATCTCCGAAAGGGAACTTTCGATGCATCTCAAAAGTCACGTGAAAGAGCCAATATCTGTTGATTTAGAGGAATATGAAGAGGcaatttcttttgtaaaaagaatatcTAGTAGTTCGAATAACCCTGAGACATCTGGAAAAGGTGGGAACTTAAATATGGTCAAAGCAATAGATTTGCCTAATACATGTGGTTTGAACAATGAATGCATCACTGAATTTGAAATGGAATCTGAAGTTTCAAGTAAAAACCTTTCCCTAAATACCCCAGTGGACAATCAATTGCTATGTAAAGTGGAACCAGACATTGGAACGGATTTTAAGTCGAACGAAGTAATGGTTATAAAGAAAGAAATAGTCGACGTGTCAAGTGGGTCAGATAATGAACAAGTACTACCTTCTGATCGCAATATTTGGAATGCGCCTCCAACTGGCTTTGACATTATTGTGAAGGaggaaaatttaaatgaaagtcGTCCAAAGTTTGAGATCTCCAATGAACCAATAAGTGACGATGAAAAGTCCTTCGACCAGTTTAACAAAGACTTTACGCCGAGGCCCGACAATGAACAGTTAGTTGGGTGTGATATTACAGTGAATCAAGAAATATCTGACGTCGGCCACCCAACATTTAAGACGGACGACCCGCTCCTTCATCTAGACCAATTCGATCAGTCTAAACAAGATCCTGCAGTTCAAACTTATACCAGTTTCACATGTGCAATAGTAGAGTGCAAAATGGAATTTAAATATTATCGAGATATCATCAACCATTACACAACTCAACATTGTCTAGGACCACCTCCTTTCAAATGTCCCGTGTGTACGTTGgtgtttcctttaaaattagATGTGCGTAGTCATCTGAAATTGCATTTAACGTGTGAATACAAGTGCCCGTATTGTCCCAGAGCGTACTGGCAACTACGTGATTTAAAAATACACCTACGGACTCATACCGGCGAGCGACCGTTTAAATGCACAATGTGCCCGAAGAGGTTTAAGCAGCGACCTGCATTGAAGGTTCACATTAAGACACATAACATTTGTAAGGAATACAAGTGCAATATTTGTTCCAAAGAGTTCTTTTCGTACAATGGTCTGTTCCTGCACAGTAAAGGACACACAGATATTAAGGAGCTGCAGTGCAGTTTTTGTAGTAAACAGTTTCCGACCAAGAGTCGTTTGCGAAGACATCTAAATGGCATTTGTCCCATTCGTACAGGAATGAAAAGTTGA
- Protein Sequence
- MKEENTFSNTTQTSCSSKVNTAVKNVDFSNTCRTCLRGITDDNFYLIDESINSIIEASAGVQVLKKHQDNLPQQICNVCLKALHFAYAFRQECQKVDALLKSYAQEKEPHASKSSTYASESEGEEHNESPGSQLEVINPLEDEDESIEYGNDSLEDKEFTEDSHGTKEKRRWGFICSLCGSVCANIHAIIHHYITQHISENDPNQCPLCSYKLKQNNALRLRNHILTHVSNAYECQYCNAQYKTAFGLKRHLVRHTGVRHRCTLCTNTYTRQDALKKHLEMHHKRSKYECIECHTNFYAADTLKLHIQSKDNICGLGPNEISPPKDFSLTEQNNLPEESVNVDEALNNEYREIKQVIPVMDDSLLSKNETLEEFQHGLSTSDSCLPVKRELMEDSLATVNETLEGRYVVNELPEDPVDESSIFENHSLTIKSEAMEDSQVVSEADDELTTEDLEGLDEYPHSSNKNSTLLEDSVEFINNPLEENDPSFSCIICSRKFQMYRDIIDHYVVDHDKGTAAFTCPFCSEELSNKFILRTHLKAHITPEYKCQYCDVQYKAAFMLRRHLLTHTGERPFSCTQCNKTFKISNEDKLPYQICHECQKVVDAAFSFRTQAQRIDDVLKRFIKKVYITAEETSTEHETIVGAEKIDEPIAIEIDGYEVSFVGEKPETTSFPCNMISSNRAEPENHNSEHEPLDIRKKLFKCGICSKEYSFRNGLHNHLMTAHVQKKEYQCPVCGKMFKKRDRFLQHKKRFCVAPDAVPKVAKEACEVTIHPIGEWMTADNFYVEIRNFSCSLCDGKFELETDFTCHMQEHSALKRCPYCKKIFNRAISLESHVRSHTNDKPFVCPLCTKGFCAPRAFRNHLKLHTERKAYVCNTCSKKYISERELSMHLKSHVKEPISVDLEEYEEAISFVKRISSSSNNPETSGKGGNLNMVKAIDLPNTCGLNNECITEFEMESEVSSKNLSLNTPVDNQLLCKVEPDIGTDFKSNEVMVIKKEIVDVSSGSDNEQVLPSDRNIWNAPPTGFDIIVKEENLNESRPKFEISNEPISDDEKSFDQFNKDFTPRPDNEQLVGCDITVNQEISDVGHPTFKTDDPLLHLDQFDQSKQDPAVQTYTSFTCAIVECKMEFKYYRDIINHYTTQHCLGPPPFKCPVCTLVFPLKLDVRSHLKLHLTCEYKCPYCPRAYWQLRDLKIHLRTHTGERPFKCTMCPKRFKQRPALKVHIKTHNICKEYKCNICSKEFFSYNGLFLHSKGHTDIKELQCSFCSKQFPTKSRLRRHLNGICPIRTGMKS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -