Basic Information

Insect: Xylota sylvarum
Gene Symbol: -
Assembly: GCA_905220385.1
Location: LR999958.1:115901472-115903588[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.6e-05 0.0031 18.4 3.5 2 23 233 254 232 255 0.95

2 11 1.8e-05 0.0022 19.0 0.2 1 21 322 342 322 343 0.95

3 11 1.8e-06 0.00021 22.1 2.6 1 23 351 373 351 373 0.98

4 11 1.5e-05 0.0018 19.2 0.4 2 23 378 400 377 400 0.93

5 11 2.7e-07 3.3e-05 24.7 0.7 2 23 407 428 406 428 0.98

6 11 2.6e-06 0.00032 21.6 0.3 1 23 434 456 434 456 0.95

7 11 5.9e-06 0.00071 20.5 1.3 1 23 462 484 462 484 0.99

8 11 5.6e-06 0.00068 20.5 0.7 1 23 490 512 490 512 0.98

9 11 0.00098 0.12 13.5 1.0 3 23 520 540 518 540 0.98

10 11 0.00028 0.034 15.2 3.7 1 23 546 568 546 568 0.99

11 11 3.1e-06 0.00037 21.4 2.1 1 23 574 596 574 596 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.6e-05	0.0031	18.4	3.5	2	23	233	254	232	255	0.95
2	11	1.8e-05	0.0022	19.0	0.2	1	21	322	342	322	343	0.95
3	11	1.8e-06	0.00021	22.1	2.6	1	23	351	373	351	373	0.98
4	11	1.5e-05	0.0018	19.2	0.4	2	23	378	400	377	400	0.93
5	11	2.7e-07	3.3e-05	24.7	0.7	2	23	407	428	406	428	0.98
6	11	2.6e-06	0.00032	21.6	0.3	1	23	434	456	434	456	0.95
7	11	5.9e-06	0.00071	20.5	1.3	1	23	462	484	462	484	0.99
8	11	5.6e-06	0.00068	20.5	0.7	1	23	490	512	490	512	0.98
9	11	0.00098	0.12	13.5	1.0	3	23	520	540	518	540	0.98
10	11	0.00028	0.034	15.2	3.7	1	23	546	568	546	568	0.99
11	11	3.1e-06	0.00037	21.4	2.1	1	23	574	596	574	596	0.99

Sequence Information

Coding Sequence: ATGTCTCTAGAAATCACGAAGATCTGTCGAACCTGCTTAGCCCTGGAAGGTGCTCTACTGTCCATCTATGACAGTAAAGGCTCTTCAGGAGGTCACGGTTGTGTTGCAGATATGCTTGGAGACTTAATTAGCATCCCACCCAAGAAATCCGACGGAATGCCAGAGAAGGTATGCATTGCATGCATCAGTGAAATTAACCGCACCTACTCGTTTAAAATGAGATGCGAAAACTCCGACAGAACACTAAGGCAGCTCCTTAACATTGCAGAAGAACCCGTGGAAGAGACCGAGGAGGTAAAGTTGAAAACAGAACCGAATACTGCCTACAAACTGGTCGATGAGAAGAAGAAACCACAGAAAAGAAAAGCAGAGACCAATCTGAGGGTGATTGACGAAGACGGTGAGCAAGAGACATCGGCTGACATGACAGAAATTTACTCTGTTCAGGCCGAAGAGGATCTAGAGGCTTCTTACTTCGTTATCGGTTCACAACATGAGGATAGCGAGAGTGAAGGTGAAGGTGAGAAACAGGACGCCCAAGACGAAGCTAATGTTGAGGTCTACGAGGAGTTACTCAGTAAATACGTCAATCAGACGCAGGAAAACGAAGGGGAAACTGTAATGGATGAGATAGACGACTCGGATGAGTACAAACCACCAAGAAGGCGCGCGACACaacgaaagaaagaagaacTCAAATGTCAGTCGTGCCCCATGACATTTGTTCACCCGAGGAATCTCGCAAAACACATGAACAAACACCATAACGTGCAAGAAACCACATTCGCCCTAGAAGAAAAGCAAGAGGTTCCAATGGAAAAGACAAAAGCAGAGCAAGAAAGCACTCCAACGCCAGAGGAAACGGAAGACTTCGAGGTGGAGTTCCAAGTAGACGAATCCGAGGATAATATCATCGAGGATCGTGCCCTTCTAAAAGAACTATTGGACGTACAAATGTACAAACACCGCTGTCCATACTGCGGGGCTGGATTTGCGCAGCAAAAATCTCTAAACATCCACATCAAGCAGAGCAAATGTACTGAGAAGCAGTACTGTTGCTCCAAATGTCAAAAAGTGTTTATTTCCCAAGAAAGCCTTAGTGCGCATCTTCGAACCCACAAGGACGAAATTAGCTGCGACACCTGTAACCAAACATTCAGCCAAAAGGAAGATCTCAACGAACACATGGCGGAGAAACACAACGTCAAGGCCAAGAACAAGTGTCCAATCTGCAAGAAAGTTTTCTCGATGCTCTCGACTCTCAAGGACCACATGCGCATACATAGCGGTGAGCGACCATTCCTCTGCGCTCTCTGTGGCAAAGGCTTCAGTCAGAATGCCAATTTGAAGCAGCACGTCATGCGACACAACAAACATAAACCTTTCAAGTGTGATCAGTGCACCAGATCGTTCGTCAGCAAGGGCGAACTCTACTCCCATGTCCGCAGCCACACCGGGGATCATCCGTTCGTTTGTCTCGTCTGCAAGGCATCCTTTACGACATCAAGTTCTTTGGTGAAGCACAAGCGTATTCATACGGGAGAACGACCTTACGGCTGTGAATTTTGCCCAATGAGATTCACCGCACTGAACACCCTTAAAAATCACCGACGAACTCACACCGGTGAAAAGCCTTACAAATGCAAATTCTGCAGCCGTGGATTCGCCCAGAAGAGCGACTGTGTGATTCACATGCGAACGCATACCGGCGAACGAAGGTATGTCTGTCAGATTTGCGGCTCATCATTCCACCAGTCAGGTACTCTGCGAACTCACATGAAAACCCACAGAGGTGCTAGGGCTAGTGCCGAGGAACGATCACACAGTGTAGTTGACTTAGTTGATGCCGAAGATATGGAAGAGGATCAACCACAAGAACAATTGGAGGTGGAGAAGAAACCGAGCACTTCAATTGATGTTGCCGTTGAACTGGGCGAGGATGATATCCTGAATTTTGCCATTGAGGAGTGCTCCAGCGAGAATAACGATTTCAGTGGTGAATGA
Protein Sequence: MSLEITKICRTCLALEGALLSIYDSKGSSGGHGCVADMLGDLISIPPKKSDGMPEKVCIACISEINRTYSFKMRCENSDRTLRQLLNIAEEPVEETEEVKLKTEPNTAYKLVDEKKKPQKRKAETNLRVIDEDGEQETSADMTEIYSVQAEEDLEASYFVIGSQHEDSESEGEGEKQDAQDEANVEVYEELLSKYVNQTQENEGETVMDEIDDSDEYKPPRRRATQRKKEELKCQSCPMTFVHPRNLAKHMNKHHNVQETTFALEEKQEVPMEKTKAEQESTPTPEETEDFEVEFQVDESEDNIIEDRALLKELLDVQMYKHRCPYCGAGFAQQKSLNIHIKQSKCTEKQYCCSKCQKVFISQESLSAHLRTHKDEISCDTCNQTFSQKEDLNEHMAEKHNVKAKNKCPICKKVFSMLSTLKDHMRIHSGERPFLCALCGKGFSQNANLKQHVMRHNKHKPFKCDQCTRSFVSKGELYSHVRSHTGDHPFVCLVCKASFTTSSSLVKHKRIHTGERPYGCEFCPMRFTALNTLKNHRRTHTGEKPYKCKFCSRGFAQKSDCVIHMRTHTGERRYVCQICGSSFHQSGTLRTHMKTHRGARASAEERSHSVVDLVDAEDMEEDQPQEQLEVEKKPSTSIDVAVELGEDDILNFAIEECSSENNDFSGE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01541596;
90% Identity: -
80% Identity: -