Xsyl014941.1
Basic Information
- Insect
- Xylota sylvarum
- Gene Symbol
- -
- Assembly
- GCA_905220385.1
- Location
- LR999958.1:106542120-106551180[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.0055 0.66 11.1 1.6 1 23 422 444 422 444 0.98 2 31 1.9e-05 0.0023 18.9 1.3 1 23 451 473 451 473 0.98 3 31 0.00017 0.02 15.9 3.3 1 23 587 610 587 610 0.96 4 31 1.9 2.3e+02 3.1 1.2 1 19 647 665 647 668 0.89 5 31 1.4e-05 0.0017 19.3 0.2 2 23 677 698 676 698 0.96 6 31 4 4.8e+02 2.1 0.2 2 23 739 760 738 760 0.94 7 31 0.067 8 7.7 0.0 1 23 835 858 835 858 0.93 8 31 0.025 3 9.1 0.2 1 20 867 886 867 888 0.94 9 31 2.5 3e+02 2.8 0.6 3 23 899 919 898 919 0.95 10 31 7.9e-05 0.0095 16.9 0.4 1 23 926 948 926 948 0.98 11 31 0.05 6 8.1 1.6 2 23 960 981 959 981 0.97 12 31 0.013 1.5 10.0 0.5 1 23 1056 1079 1056 1079 0.94 13 31 0.24 29 6.0 0.5 3 20 1120 1137 1119 1139 0.93 14 31 0.0015 0.18 12.9 2.7 2 23 1147 1168 1146 1168 0.97 15 31 5.3e-07 6.3e-05 23.8 1.5 1 23 1175 1197 1175 1197 0.98 16 31 0.79 95 4.3 2.0 2 23 1228 1249 1227 1249 0.96 17 31 0.00027 0.032 15.3 2.6 1 23 1328 1351 1328 1351 0.97 18 31 0.019 2.2 9.5 2.2 1 23 1388 1411 1388 1411 0.97 19 31 0.13 15 6.9 3.7 1 23 1420 1442 1420 1442 0.96 20 31 5.1e-05 0.0061 17.5 1.0 1 23 1449 1471 1449 1471 0.98 21 31 0.00049 0.059 14.4 3.4 2 23 1495 1517 1495 1517 0.95 22 31 0.0042 0.5 11.5 1.9 1 23 1558 1581 1558 1581 0.95 23 31 9.3 1.1e+03 1.0 2.1 1 22 1588 1609 1588 1609 0.93 24 31 0.054 6.5 8.0 0.2 1 23 1618 1641 1618 1641 0.94 25 31 0.00052 0.063 14.4 1.4 1 20 1647 1666 1647 1667 0.94 26 31 0.00015 0.018 16.0 1.3 1 23 1677 1699 1677 1699 0.98 27 31 1.1e-05 0.0013 19.6 0.2 2 23 1719 1740 1718 1740 0.95 28 31 0.00063 0.076 14.1 4.3 1 23 1746 1768 1746 1768 0.99 29 31 2.5e-07 3e-05 24.8 3.4 1 23 1774 1796 1774 1796 0.98 30 31 7.3e-07 8.8e-05 23.3 2.4 1 23 1802 1824 1802 1824 0.99 31 31 0.00023 0.028 15.5 0.1 1 23 1830 1854 1830 1854 0.93
Sequence Information
- Coding Sequence
- ATGAAATCTCCAAATAAGTCGAGCAAAGCACTCCTTCTCCAAGAGGAACAGACAGATATGGCTCCCCAAACGTATTCCAATGTTAATTCAAAAGAAGCTAATGATCCAAACACGGAGGACTCAAATCGAAATGCAAGCACGAGTTCAAGTAGTAGGTCAAAGCGCAGTCCGTACCAAAAAATCTTATTCGAGCAAAAGGAGTTACTTGTTAAGCTCTATGAAGAAGGAAAAACAATTAAGGAAGCTGCATCGATTACAAACATTAATACAAACACTGCAAAGTGTATTCTGCGGAATTATAAAGAAAGTAGTGATGTACTCATAGAGAAACGTCGTGGCGGCAATAGGTCGCGAAAACTGACTAATGATGCCCTATCCGTTATTGAAACATGTGTAGAGAAAAATCCGGGAGTTCATTTAGAACACATTCGGCAAATTCTAGCTGCTCAGAAGGTTTACATGTCCAGATCTAGCATCCATCATGGCCTACGTGAGTTGAAAATCACTCTGAAGCTTCCATTTTATGACAATGATCAGGTGAATCAACCACAAGCAATAGAACACCGAAGAATTTTTGCTCTTGAATTCGCCAACTGGGCGCTAGATGATCGACATAAAATGATCTTCATAGATGAATGTGTGTACAATTTACATCTGAGTAAGCATCAGGGAAACTTAAAGCAGAAAACAACTCCTACAGTGCTAGGTCGGAGTGCAGTTGTTCTAGCGGCTTTAAATAGTAATGGaatcatacatacaaatatttttagcGGCAGCGCATGCAACACGACGAAATTCGCTGTCTTCCTACGTGAACTGGTCGACAAACTCTCCATGGAAGATGACATGAAAGATGCTATCCTAATCATGGACAATGCAGGCATTCATGTGAGTCGTGATGTAGGGGAAATACTCGCGACATCTAAGTACTGTGTCCGAACGCTGCCTCCTTTTTCTCCAATGCTGAATCCGCTGGGAAAGTCCTTTATAAAAATGAAAGCTTATGCGCGGGGTGTACTAAATGATTCATCGATAGAGGAGACCAATTTGGTTGAAGTTATAGAGAAAAGTGTATCAACTATTACTGCGTCAGATTGTAGTAATTACGTGATGGACGTGATTTTGGTACTTCATGATGCCATTGCTGGAAGACCGTTTCAtaaaaaatcaacaaaaaagaaagaaaacaagaaatccGGGACACAACAAACACAAGTAACCACCAGAAGTCAATCTAAGAAAGCTGAAACACCTTCCGGCCGTTTTGAGTGCGATTCTTGTAGCAAAACGTTCGCTTGGAAGAAGGATTTGTTTCGTCATGAAAGATACCATAAGCCGAATACAAAGAAATTTCCGTGTCCACACTGTGAACGTAGATTCATACGAAAAGATAAACTTTCCTCGCATTTACTCGTTCACATGCCGAAAAGCCCTCAATATTTTGCTCAACATTTATTTTCGgagaagaaattaaaagaaatcaaGTGCATGATATGCAGCTTCGACAAGGCATCTAATGTTCGTGAGCTTCGTCGGCATATAAGTTTACATAATAACTTGGAATTTTCTAAAGATCTTGCTAACAGTGAAGTCATCAAAAGGTTTTACCCAGATAGAGATTTGAACGAAGCCAAACAATTGATTTCCAGTCAAATCAAAGCAAAGCAATTCGGGAAACTCCATTCGATAGTTAATGCGAATAGCTACGAAATGGGTATAAGCGATTCCGATGAAAGTGATACAGAAGTAGAACCCCAATACACGTGTGAAGTATGCCAGGAGTCCTTTAATCGAAAACACAAACTCATGACACATCAGTCTTACGAGCATACTTTTGATGAATGTCCCTACAAATGTGAGGCTTGTAAGTTGAGATTTACTTGCCAAAATGTGCTTGATAGCCACCTGAAGCATCACTGCGAAAACCCCGACAAAGAGTACCAATGTAAGAAGTGTCCAGGCCGCTTCGCTTGGCTGAAGAACTTTGAGAATCATGAATGCGAAAAAGTGATTGAAAAAAAGAGCGTCAGCTGCGATGTGTGTGATAAGGTTTTCAATTCACCTAGAGAcctaaaaattcacaaaaagatTCATTTACCAAGTGATTTGCCTCATGACTGCTCTGTCTGTGATGAGAAAAACCTTAGCGTTGAGAATCTAAGTTCGCATTTATCCATGCACGTTAAAAAAGACAAGGTGTCACTGAAGAAATTGGTGTGCATGCTTTGCCAAGCGGATCTTTCAAGTGTTAGCCGTTTGAAAAATCACTTATTCTCGCATTCAGATGGCCAGACAGGTGTTAATTTTAAAACCTCCGGATTTGTAAGCAATTTTTACCCAGATGCAGGCGAAGCCGCCATTACGGAGTACATTCGAAATTGTTTCAATGAGCAGAAACTTGAGCAACTATATCTGGCAGTGAATAAATTTGGACAAGAGATGGTATTGAGTGATTCCGATAGTGACGACGAGCAACAATCGCAAGAGAGTCCTTTAGAAACCTACCTCTGTGaggtatgtggtgtgaaatttccTCGTATCCAAGCCATTCGTCAACATCAGGACGTTGAACATGAACCAGAGAAGACACGATTTCCATATAAATGCGATGAATGCAGCGAACAGTTCATAGGCGAAGTTCTCTTAAAGCGTCACAACAAAAACGGATGTCTGAACGGAAATAGAACCAATGCTTGCCGAAAATGTGGCGCTAAATTCGTCTGGAAGCAAAATCTGGAATTTCACAAAAGAATCCATATACCAAGCGGTAAGTCTTACGACTGCAACGTGTGTGGTGAGAAATTTTTTCGACCAGAGAATCAACGTTGGCATTTGAAGATGCATTCTAGAAGAGACAAGCTGCCGGTAAAGAAAATGCAGTGTATGCTTTGCCAAACTGAATTTTCAAGTGTCGGTAGATTGAAGCATCATTTACTCTCCCATTCCGATGGCCAAACAGACGTGAATTTTAAAAACTGCGGATTTGTTAACAGATTTTACCCAGACGCGGAAGAAGACACGATTTCAGAACGCATTCGGAGCTGTTTCAGTGAGCACAAACTTTGGCAGCTATATAATGCGGTGAATAAATTTGGTCATGAGATAGTCTTGAGTGATTCCGATAGTGAGGATGATGAACAGTCAAAGGACGGGTCTTCAGAAACATATATATGTGAGCTGTGTGATGTGAAATTCCCTCGTATGCAATCGATGCGACAACATCAGCAATTCGAGCACGATTCGATGAAATCAAGTTTCCCACATAAATGTGCCGAATGCGGCGATCAATTCATTTGCGAAGCCCTTATACGGCGTCACATCAAAAGTGAATGTTTGAATCCAAATAGGATTAACGCCTGCAAGAAATGCGAAACCAAATTCACTTGGAAGGAAAATTTGGTCGCCCATGTTTGTGGGAAAGGATCCAAAGATGATAAACAATGTGAAGTATGCGGAAAGAAGTTTAGCTGGCTAAAAGATCTTCATCGTCACAAACGAATACACATACCAGATGTGAAGAAATTCGAATGTTTAGTGtgcgaaaaaaaattcaaccgcAAGGATAACTTGCGACAACATATGAAAGTTCACATGATTGACGATATGATAAAAGCAAAAAAGGTGCTCAAATGGGAACATCAGGATGAAAACCTGTGCAGGCCACATGGTGAGAAAACCATTCAATGCAAGATTTGTTCAACAAAACATACCTCAATTCGGGATTTAACATCTCACTTGTTGTCGCATAAAGAACGTCTCAAACTGAAAGAATCCGAAGTGAGGGAGCTATCCATGCGGTTATACCACAGACAACTGGATATGCGATCTCTTTCAAGATCAATATCCAGAGATATCACAGAGGGCAAACATGCCCGTTTCTATTCAATCGCAAACGAAATGGGTTACGAATTAAATGTGCTGGATTCAGAAACTGGCAGTGAATTGGGTggagacgatgacgatgatgatgctcTCAAGGGATATATCTGTAAAGTGTGCAATAAAAGCTTTGATAGgaagtttaaaattttcgaaCACCAAAGAAAGGATCATTCTTGGGATGAACTACCATTGGAGTGTACACATTGCTCGGCAAAGTTTGCTTGTGAAAATCTATATAAATTGCATTTACAGTATGAGTGCGAGAATACTGAAAAACAGCATAAATGCAAGATGTGTCCATTGAAATTCATGTGGAAAGATAATCTTAGAATTCACGAAAGGTCTACACATGATAAGCACCCAACGGGAAAGAAGTTTCGTTGTAAGACATGCGATAAGACTTTTCTTTGGTACAAGGAATTGTCGAGGCATAAGAAAACCCATCGACTCAGTGAGGAGAAATTCGAATGTACTTGGTGTTTCAGGGTATTTTTACGAAAAGATAATCTTAAGGTTCATATGAAAGTTCATCAGAATGCCAACCATCTTTTGCTGCCCGATATCTACTACCTAGCTCGGCCAAATGGTGTTAAGGTTGCTGAATGCAAACATTGTGATCAGAAATATTCCACAGCTCATGAGTTGCGCGAGCATATTCAAAACTCGCACTTGAAGTATCAAATGCTCATTAGCATTCCCAGTCCAACAAGTTACTCCATCACAAATGCTTTAGGTTATGAGATGGACATCGAAGACTCCGAAACAGAGAAAGAGGAACCCATAGAGAAGTACTCTTGTGAACTGTGTAACGCACATTTCAATCGTCGCTTTAAATTACTGCAGCATCAGCAAGCGGCTCACTACTCCGACAACATGCCACACAAATGCACCCAGTGTAGCTTTAAAAGCGTATCAAAGTACGTGCTTGGCTATCACACACGTACACAATGTATGAACGAAGACAAGCAATACCGGTGCAGCAAATGTACAATGCGATTTATGTGGCCGGAAAATTTGGAAAATCATGAAAGCGTAATACATGACAGCCCACGAGCGCACACCTGCGAGGTGTGTAAGAAAGATTTCGCCACACAGCACGACCTAAAGAACCACGCTAATTGCAAACCACCGACAGAGGTACAGCTTTTCGAATGTGAGTTATGCGATCGCAAATACAACCGTAAAGATCGTTTGATGCAGCACGTAAAGATGCACAGTACTGATGATGGCAAAGGTCCACGCGCCAAACGTGCAGCACAATCGGACAAGTTTTTATGTGCGTTCTGTGGCAAGGCAGTATCGAGTTCTTCGAATCTAGTGATACACATGCGGCGACATACAGGCGAGAAACCATTCAAATGTGAGTTTTGTAATAAAGGTTTTCCGCGATCTTCTGATTTGAGTTGTCACAGACGGACGCATACAGGAGAGCGTCCGCACAAGTGTACAGTATGTGACAAGGCGTTCTCTCGCTCGTACAAACTCCAAACTCACATGCGCATTCATTCGGGAGAGAGGCCCTATAAGTGCACCTACTGTGAAAAGAGTTTCACTCAATCCAATGACTTGACGCTACATGTGCGTAGACATACCGGCGAAAGGCCATATATATGCGAAATTTGTGGAGAGAGGTTTATACAGGGAACAGCACTTAGGAATCATCGCAGGATGCGGGGCCATTATGAAATTTAG
- Protein Sequence
- MKSPNKSSKALLLQEEQTDMAPQTYSNVNSKEANDPNTEDSNRNASTSSSSRSKRSPYQKILFEQKELLVKLYEEGKTIKEAASITNINTNTAKCILRNYKESSDVLIEKRRGGNRSRKLTNDALSVIETCVEKNPGVHLEHIRQILAAQKVYMSRSSIHHGLRELKITLKLPFYDNDQVNQPQAIEHRRIFALEFANWALDDRHKMIFIDECVYNLHLSKHQGNLKQKTTPTVLGRSAVVLAALNSNGIIHTNIFSGSACNTTKFAVFLRELVDKLSMEDDMKDAILIMDNAGIHVSRDVGEILATSKYCVRTLPPFSPMLNPLGKSFIKMKAYARGVLNDSSIEETNLVEVIEKSVSTITASDCSNYVMDVILVLHDAIAGRPFHKKSTKKKENKKSGTQQTQVTTRSQSKKAETPSGRFECDSCSKTFAWKKDLFRHERYHKPNTKKFPCPHCERRFIRKDKLSSHLLVHMPKSPQYFAQHLFSEKKLKEIKCMICSFDKASNVRELRRHISLHNNLEFSKDLANSEVIKRFYPDRDLNEAKQLISSQIKAKQFGKLHSIVNANSYEMGISDSDESDTEVEPQYTCEVCQESFNRKHKLMTHQSYEHTFDECPYKCEACKLRFTCQNVLDSHLKHHCENPDKEYQCKKCPGRFAWLKNFENHECEKVIEKKSVSCDVCDKVFNSPRDLKIHKKIHLPSDLPHDCSVCDEKNLSVENLSSHLSMHVKKDKVSLKKLVCMLCQADLSSVSRLKNHLFSHSDGQTGVNFKTSGFVSNFYPDAGEAAITEYIRNCFNEQKLEQLYLAVNKFGQEMVLSDSDSDDEQQSQESPLETYLCEVCGVKFPRIQAIRQHQDVEHEPEKTRFPYKCDECSEQFIGEVLLKRHNKNGCLNGNRTNACRKCGAKFVWKQNLEFHKRIHIPSGKSYDCNVCGEKFFRPENQRWHLKMHSRRDKLPVKKMQCMLCQTEFSSVGRLKHHLLSHSDGQTDVNFKNCGFVNRFYPDAEEDTISERIRSCFSEHKLWQLYNAVNKFGHEIVLSDSDSEDDEQSKDGSSETYICELCDVKFPRMQSMRQHQQFEHDSMKSSFPHKCAECGDQFICEALIRRHIKSECLNPNRINACKKCETKFTWKENLVAHVCGKGSKDDKQCEVCGKKFSWLKDLHRHKRIHIPDVKKFECLVCEKKFNRKDNLRQHMKVHMIDDMIKAKKVLKWEHQDENLCRPHGEKTIQCKICSTKHTSIRDLTSHLLSHKERLKLKESEVRELSMRLYHRQLDMRSLSRSISRDITEGKHARFYSIANEMGYELNVLDSETGSELGGDDDDDDALKGYICKVCNKSFDRKFKIFEHQRKDHSWDELPLECTHCSAKFACENLYKLHLQYECENTEKQHKCKMCPLKFMWKDNLRIHERSTHDKHPTGKKFRCKTCDKTFLWYKELSRHKKTHRLSEEKFECTWCFRVFLRKDNLKVHMKVHQNANHLLLPDIYYLARPNGVKVAECKHCDQKYSTAHELREHIQNSHLKYQMLISIPSPTSYSITNALGYEMDIEDSETEKEEPIEKYSCELCNAHFNRRFKLLQHQQAAHYSDNMPHKCTQCSFKSVSKYVLGYHTRTQCMNEDKQYRCSKCTMRFMWPENLENHESVIHDSPRAHTCEVCKKDFATQHDLKNHANCKPPTEVQLFECELCDRKYNRKDRLMQHVKMHSTDDGKGPRAKRAAQSDKFLCAFCGKAVSSSSNLVIHMRRHTGEKPFKCEFCNKGFPRSSDLSCHRRTHTGERPHKCTVCDKAFSRSYKLQTHMRIHSGERPYKCTYCEKSFTQSNDLTLHVRRHTGERPYICEICGERFIQGTALRNHRRMRGHYEI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -