Xsyl003361.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylota sylvarum
Gene Symbol
grau
Assembly
GCA_905220385.1
Location
LR999957.1:33363427-33383805[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 41 1.1 1.3e+02 3.9 0.9 2 23 206 228 205 228 0.90
2 41 0.01 1.2 10.3 0.1 6 23 237 254 237 254 0.99
3 41 5.2e-06 0.00063 20.6 3.1 1 23 260 282 260 282 0.99
4 41 0.00053 0.064 14.3 4.9 1 23 288 310 288 310 0.97
5 41 0.078 9.4 7.5 0.3 1 23 316 339 316 339 0.90
6 41 0.0011 0.13 13.3 0.5 3 23 347 367 346 367 0.97
7 41 8.3e-05 0.01 16.9 0.4 2 23 376 398 375 398 0.97
8 41 0.73 88 4.5 0.1 2 23 406 428 405 428 0.92
9 41 0.037 4.5 8.5 0.1 1 13 434 446 434 450 0.89
10 41 0.0042 0.5 11.5 0.4 2 23 644 666 643 666 0.96
11 41 0.25 30 5.9 1.3 6 23 675 692 675 692 0.98
12 41 0.0013 0.16 13.1 1.6 1 23 698 720 698 720 0.99
13 41 1.5e-06 0.00018 22.3 2.0 1 23 727 749 727 749 0.99
14 41 0.0011 0.13 13.4 3.1 3 23 756 777 754 777 0.95
15 41 0.025 3 9.1 1.2 2 23 786 808 785 808 0.95
16 41 7.6e-05 0.0092 17.0 0.5 1 23 815 838 815 838 0.97
17 41 0.065 7.8 7.8 0.4 1 16 844 859 844 860 0.86
18 41 0.2 25 6.2 0.2 2 23 1043 1065 1042 1065 0.96
19 41 0.034 4.1 8.6 1.4 6 23 1074 1091 1074 1091 0.98
20 41 2e-05 0.0024 18.8 1.4 1 23 1097 1119 1097 1119 0.99
21 41 3e-05 0.0036 18.3 5.7 1 23 1126 1148 1126 1148 0.99
22 41 0.0027 0.32 12.1 2.5 3 23 1155 1176 1153 1176 0.96
23 41 0.00063 0.076 14.1 0.5 1 23 1214 1237 1214 1237 0.95
24 41 0.11 13 7.1 0.2 1 17 1243 1259 1243 1259 0.91
25 41 0.047 5.6 8.2 0.3 2 23 1504 1526 1503 1526 0.96
26 41 0.09 11 7.3 0.1 6 23 1535 1552 1535 1552 0.99
27 41 0.012 1.5 10.0 1.3 1 23 1558 1580 1558 1580 0.98
28 41 3e-05 0.0036 18.3 1.4 1 23 1588 1610 1588 1610 0.99
29 41 6.2e-05 0.0075 17.3 0.3 2 23 1617 1639 1616 1639 0.95
30 41 2.8e-06 0.00034 21.5 0.5 3 23 1647 1667 1646 1667 0.96
31 41 0.00032 0.039 15.0 0.2 2 23 1676 1698 1675 1698 0.95
32 41 0.0017 0.2 12.7 0.1 1 23 1705 1728 1705 1728 0.94
33 41 0.011 1.3 10.2 0.3 1 16 1734 1749 1734 1750 0.87
34 41 3.3e-05 0.004 18.1 1.6 1 23 2037 2059 2037 2059 0.99
35 41 0.09 11 7.3 6.3 1 23 2067 2089 2067 2089 0.98
36 41 8e-06 0.00096 20.1 0.3 1 23 2097 2120 2097 2120 0.96
37 41 0.0072 0.87 10.8 0.2 3 23 2128 2148 2127 2148 0.96
38 41 7.9e-05 0.0096 16.9 0.7 2 23 2157 2179 2156 2179 0.97
39 41 0.00025 0.03 15.4 0.1 1 23 2186 2209 2186 2209 0.94
40 41 2.1e-06 0.00025 21.9 1.0 1 23 2215 2237 2215 2237 0.98
41 41 5.3e-05 0.0064 17.5 5.0 1 23 2243 2266 2243 2266 0.98

Sequence Information

Coding Sequence
ATGCTTTGCATTTTATGTGTGACACCACcaatgcaagaaaaaataaacatattcgACAGGAACCGGCATGGTCTTAACATCGCCGAGATTATTAGTAAACATTTTTGGCTGCAgCCAAATGAAAACGATGAAAATGAGAAATTCATCTGCTCCTTCTGTTGGAACTCCTTAAATTCCTTTGATAAATTCTATGCTATGGTCGAGAAAGCTCATGCTAGGATAACCAGCATAGATATTGTAAGAGAAGAAAATACATCTAACGACCATTCTGATCCGTTAACCATAGCCATAAAGGAAGAGATTTGCGATGATCCTATGAATGATATGGAACCACTGGATGCACAGAAGACGGACATTGGAAAGAAAGAGGACATACAGCAAGATACAAAGTCCGACTCTGAATCGGAAATCCCACTATCAAATTTGATTAGATCTcgtaatttacaaaaaaagaaaaaagtcgaACAAATAGCTGAGAGAAAGAAAGTCCCGGACGATGGCAGTCAGACATCCGAAGTTATAACAGTATGGCAAGCCACTTGTTATTCAGAAGAGAATAATAGGCGAATAACCACTGAGGAGTCTGACGAGTTCATCATAAAGAATCTCGATTTATCATGCTGTATTTGTAACCAAGCATTGACCAATTTTAGTGTCCTCCAAGAACACTACGAATTCGTTCACGATCAACGTGGCTATGCTGCATGTTGTGGCAAAAAATTCGATAAGCGAAGTGCGCTAGTCGATCACATTTTAATGCATAAATATCCTGAGTACTTTAAATGTGACAAATGCGAAAAATTTTTTGCAAGTCGTAAAAATTTGAAGGAGCACCTGAAAACAcatgacaaaaaattaatccaTAAGTGCGACAAGTGCAGCAAGGCTTTCCATCGGAAACTGCTGCTTCAACGTCATATGGACGTACACGTGACAGAGCGTACGTTCAAATGTGAGGCGTGTGACAAGTTATTTGCCTCGAAATTCGCTCTGGGACAACATACTTACGGTGTACACAAAGGTGGCTACACGAAAATTTGTGACCAGTGCGGCAAAGTTACACGCGATCGAGAAACTTTCCGGCTACATCAGATGGAACATACTGGTGAACCAAAAACATACGTGAAATGCGAAAAATGTGGCGTTAAACTTGCTAGCAAATCCGGTCTTAGACGGCATATTAGATCTCAGCATGTGGAAAGTCAAATGCCACAAGTGTGTAGTATTTGTGGTGCCGAGAAAAGCAGTATTTATGCACTAAAGCGTCATATAACATACATGCACAAGTATGAACGAACTTTTAAGTGTCCTATGTGCGAGAAGGCGTTCAAGACAGCAATCGTACTTAAGCCAAATTCTGAGGATTGTGAAGCCAAAGTAATATGCTATTCCTGCTGGGATGTCTTGGATTCCTTTCATAAATTCTACCAAAAGATTAAAGAATCTCACGCTAAGTTTGACACGGTCAAACTTTTAATGGAGCATGATAAAACCGTCATAGTTAAACCTTCGATGGAGGATTATGAAACCGACAACGATAGTTTTGACGTGTTTGATAAGTTTTTAACTTCAGATATTAAGTCCGATTCGTCTCAGGACCCTAAAACTGATCAGACTGAGGACGacacagttaaagaaataaAGTCTGAGTCTGAATCTGAAACTGTGAATGTTCCATTACATAATTTAAGGAATCGTAGACAACCAACAAATAACGATGAGCAAAGTAGTATCTGTGCCAATGATGACGATAGCGACGTATCAGCTAATAAAGAAGAGACGCCAAATGAATCAGTAGACAAAGACAAAGACTACGATCCAcctaaaatcaaaatgaatccTAAAACTAGCCCAAATAACAAAGACGTACTAAAGAGAAAAGTTTCCTGTAAGGATTTCGATAACATTATCAAGCAGAATATGCAGCTAAGGTGTGAAACCTGTAATAAATCAGTGGCCAGCTTCTTTGCCCTCAAGGAACACTATCGCTCAGCTCACAATAAATCTGGTTACGTTACTTGCTGTGACAAGAAATACGACAGTCGTCATGCTTTGGTTCATCATATATTGTTGCATCAAAATCCAGACAGGTTCAAGTGTCCCGTATGTGGCAGAATTATGgccaataaaaaaagttttaaataccACACCAAAACACATCTAAACAAAGAGCGTATCTATAAATGTGACAAGTGCAAAAAGGGATTCTCTGGAAAAGAAAAGCTTGAGCGTCACATGCAGACACACCTTAGAATTCAGCAAATCTGCGAACTGTGCGGTAAAGTCTGTCGCGACAAACATGCTCTAAGACAACATAAGCTACGAGATCATTCGGGGGTGCCGAAAAAACGTTTGGAATGTAAAAAATGTGGCTCTTATCTTGCAGATGCCTCAACACTGCACACGCACATGAAGTATCAGCATCCGAAGACTGATGATATTTACAAATGCAatatttgtggaaaaatatCAACAAGTGGCTACGGGCTAAAACGGCATATACAATATATGCACAAATTTGAGCGAAgtcacaagtgtaaaatttgcgAGAAGGGCTTCAAGACTGCACAGAGACTTAGGCCAAGTGCAGAAGATGCCAACGCCAGAGCAATTTGTTGTTCCTGCTGGAGTACCTTAAATATATTTCATAGATTCTACCAGGAGGTGGAGAAAGCTCATACTAGGCTGGTCAAAGTAAAACTTCCCATCGAAGATGATGTGTTCGATGCAGACCACTTCGAAGCATACAATGACTTCTTCAGCAAAGATGTCAAGGTGGAGGCATATGAAGATCCTAAATTAGAAGCGTTACAATACGATAAAGAGAATCCTCAAAATCCAAATCGCTCAAAGTCTGACTCTGAATCTGATGTTCCTTTAGTTAGACTGAGTAAACAACGAAGCTCAACAAGAAATCATAGTTACGAACAAGTCACTGCCGATGATAGTGATAGTGTGTCTTCAACTAACAAGAGAACCCGAAAATTGAGAATCCCAGACAACGACCGTGACTACGAGTCACCTAAAAGCAAATTAAAGCGTATCGTGCCTGACGATTCAACATATAACAAAAGAAAGATTTCTTGTAAGGAATTCGATAAAATTATCAAACAAAACATGAAACTCTCGTGTGAAATTTGTCGAAAACCAGTAGCTAGTTTCTTTGTCCTCAAGGAACACTATCGTTCAGTTCACAACGAGACTGGTTACGTGAATTGTTGTGATAAGAAATTCAATAGCCGACATACCTTGGTCCAGCACATACTGTTACACCAAAATCCCGATTTCTACAAGTGTGAAAAATGTGGCAAAATTCTATCCAATATGAAAGGTTTGAAGAACCACATGAAAAAGCATTTGCACGACAAACACATCTACCAATGTGACACATGCAAAAAGAGTTTCtgtaaaatggaaaaacttgagCGTCATATGAAAACACATGTGAGTGCTGAACAAATTTGCGAGCATTGCGGGAAAGTAATACGCGGCAGGCATAGTCTTAAACAGCATCAACTTCGAGAGCATTCGGGCATACCAAGACAACGGGTGCAATGTGAAAAATGTGGCGTTTATCTTGCGGATAGTTCAAGTCGAAGTTTTCATATGAAGTATCAACACCCAGAAAAAGATGTCGTACATGTGTGTAATATCTGCGGAAAGATATCAACATCGGGCTACGGATTAAAACGTCACATATTGTATATGCACAAATGTGGACGACCACACAAGTGCGCAATGTGCGAGAAGGCATTCAAAACAGCACAGAAACTTAGGCCGAATGTAGACGATGTGAATGCAAAAGTTATATGCACGTCCTGTTGGGGAGCATTGGACACCTTTCATaagttttatttgcaaattgagGAAGCGCATATTTCACTGCAAAAAGCCATCGAAAAAGATGAGTTGAAAGTAGAGAATGAAACAGCACTACTTATTGGTGTCGTTGATCCTGACCCATTCGATGTGGTTGCATCGGAATTGCTGGATGCAGACATAAAACTAGAAGTTCCGGAAGACGCTACCGAAATAAAACCACCACTTGAGGCTGTCCAATGTGAGGGCGAAAAGAAAACAGGATATCTAAAAGATTCACCACCTAAAAGGAAGCATTCCACTGATTCAAAGAAGTCAACTGATAGTGAAGCTGCACCAGCTGCAACTCGTTCTACACGAAGTCGCACAGCGGAGAAAGCTTACGCAGCAAGCGACTCTTCTAGTGACGATGATCATGAAGACGATAAGGGTGAAGTTGAAAGGCAGAACTCACCTGACTGGCAGAATGCAAATACAgacaatgacgatgacgataGTGACTATGAGGACCTCGCATCAAAAGCGAAAAAGCAGAAGGTACTtacaaatgcaacaaaaaagCGAGGTCGACCCAAAAAAGGTGAAGTCAGGGAAACTCCTCGCAAGAAAAAGCGGACGACAGAGGAGCACTCTAAGAAAATGGAACGAATCCAGGAGTACGATGAAATGATTGCAAAGAACATGAAACTCACGTGTACCATCTGTTTGGGTGCATTTCCTAATTTTAACGTTCTAAAGCGACACTATCGTACCGTTCACAATGAATGTGGTTACGCGGTATGCTGCGGCAAGAAATTTCGCAAACGCGGTGTTCTTGTCGACCACATCTACACTCATCAGAATCCTGATTATTTCAAATGTGAGAAATGTGGCCGAGTGCTGGCGAATAGAAAAGGCCTAGATTGTCATATGCTAACGCATGACACTGATAAACAGCGCATATATCAATGTGATCAATGTACATTGAGTTTCTACACCAGACCACTGCTGACGCGACACTTGCAAACGCATATTTCTGAACGCAACATCAAGTGTCCAGAGTGCGACAAGTTCTTCTCAACTCAGGACATCTTGCGTACCCACATAAACAATGTTCACAATGCAGCGTACACTAGAATCTGCGATCAGTGTGGTAAGTCGTTCCGCCGTCCTGACGCTTTCCGTCGACATCAGTTGGAGCATGATGGCATAACTCAGCCACTTGTTCCATGTGAAAAATGTGGTGTAAAATTGACGAGCAAGTATGGTCTCAAACGGCACATGGAATCGATGCATCCCGAAACGGAAGTGACGCATGTATGCAATACGTGTGGTAAGATTGCACCCAGTGCTGCAGCATTGCAGCGGCATATCTCCTACATGCACAAAATGGAACGCAAATACAAGTGTCCCATGTGTGATAAGGCGTTCAAGAAAACCGGAGGACTTAAGCCAAATAAAAACGACGAAGACGCTAAATTTATCTGTGGCTCCTGTTGGAATGCGCTGGAATCATTTCACAAATTTTATCTACAAGTGGAGGAAGCGCATATATCTTTGGTGAAGACGAGGACCACGGCAGACGATGCTTTGAAACAAGAGGATGATCAAATAGCCACTTCAACGGAGGCGGAGGATACTGAGAAATTCGATCCGTGTACGGATTTTTTATCTGCAGACGTCAAGCTCGAAGTAAAAGAGGATGTTGAGGTCTGCCTGCCCCAATACAATCCACTTCCCGATCTGGAAGAAAAAATCGATGTCAGCCAGATCTCGAAGAGGAAAGAAATATCAGACTCCAGCGACTCTGAATCTGAAATACCGCTTGCGAACTTAGCCAAAGCTCGATCCaaaagaagcaaaacaaaagcGGCTACATCGAGCAACGACGATGCGGAATCATCACCTGAATGGCAAGACCATCATTCtgacgatgatgaagatgaagacgacgatgatgagAGTGTATTCGAAGTAAAGGAACTCGCATCGAAACGAAAAGCAGTAACTAAGACGGGGAAAAAACGCGGTAGGCCCTGTAAAAATGCCCCGAAAAACACAACACCCAAACAAACCACAGAGGAACAGATCAAGAAGCGAGAACTCTCCCAGGAATACGATGAAATAATCCAGAAAAACATGAAGTTGTCGTGTACTGTTTGCTTGCTACCGTTAGCGaactttttcattttgaaaaagcaCTACCGGTCCAAGCATAACGAAAGGGGCTACGCTTCATGTTGTGGCAAGAAATTCCTTAAGCGTGGCATCCTGGTTGATCATATTTATACCCATTTGAATCCGGAGCATTTTAAGTGCGACAAATGTGATAAGGTACTGGCTGATAGGCGGTGTCTCGAGGTGCATATGAATACGCATATAACAGAGAAGCAGCGCATATATCAGTGCGATCAGTGTTGTAAGAGTTTCTTCAAGAAACCACTGCTAACACGTCACCTACATATTCACATACCCGAGGAGGAGCGTAAATTTCCCTGCGAGGAATGCAATAAGTTCTTCCCGTCGAATTACACACTGCGGGCACATATCAACAACGTGCACCAGAATGCGTATGCGAAAATTTGCGACCAGTGCGGCAAATCAATACGCGGACGAGAAGCATTCCAGAGGCATTTGCTGGAGCATGCAGGTGTGCCAATTCCCAGTGTACAATGCGACAAGTGCGGTGCTAAATTAAAGAACAAATACGGTCTTAAAAGGCACATGAACTCGATGCACACCGAGTCGAATGTACCGCACGTATGTAATATCTGTGGCAAGGTGGCACCCAATCCGGCCGCTTTACAACGCCACTATTCGTACGTGCATAAGTGTGAACGAAATCACAAGTGCCCCATGTGTGACAAAGCCTTCAAAAAGGCCGGTGGACTAAAGgAGCACATGACAACTCATACGGGAGAAGTCCTCTACACGTGTCCACACTGCCCGAAAACATTCAACTCCAATGCCAATATGCATTCGCATCGAAAGAAAATGCATCGCAAAGAATGGGAGGAGAACAGAAGGCACCCACATATGGGTTCTGCTACAAACGCCGAATAA
Protein Sequence
MLCILCVTPPMQEKINIFDRNRHGLNIAEIISKHFWLQPNENDENEKFICSFCWNSLNSFDKFYAMVEKAHARITSIDIVREENTSNDHSDPLTIAIKEEICDDPMNDMEPLDAQKTDIGKKEDIQQDTKSDSESEIPLSNLIRSRNLQKKKKVEQIAERKKVPDDGSQTSEVITVWQATCYSEENNRRITTEESDEFIIKNLDLSCCICNQALTNFSVLQEHYEFVHDQRGYAACCGKKFDKRSALVDHILMHKYPEYFKCDKCEKFFASRKNLKEHLKTHDKKLIHKCDKCSKAFHRKLLLQRHMDVHVTERTFKCEACDKLFASKFALGQHTYGVHKGGYTKICDQCGKVTRDRETFRLHQMEHTGEPKTYVKCEKCGVKLASKSGLRRHIRSQHVESQMPQVCSICGAEKSSIYALKRHITYMHKYERTFKCPMCEKAFKTAIVLKPNSEDCEAKVICYSCWDVLDSFHKFYQKIKESHAKFDTVKLLMEHDKTVIVKPSMEDYETDNDSFDVFDKFLTSDIKSDSSQDPKTDQTEDDTVKEIKSESESETVNVPLHNLRNRRQPTNNDEQSSICANDDDSDVSANKEETPNESVDKDKDYDPPKIKMNPKTSPNNKDVLKRKVSCKDFDNIIKQNMQLRCETCNKSVASFFALKEHYRSAHNKSGYVTCCDKKYDSRHALVHHILLHQNPDRFKCPVCGRIMANKKSFKYHTKTHLNKERIYKCDKCKKGFSGKEKLERHMQTHLRIQQICELCGKVCRDKHALRQHKLRDHSGVPKKRLECKKCGSYLADASTLHTHMKYQHPKTDDIYKCNICGKISTSGYGLKRHIQYMHKFERSHKCKICEKGFKTAQRLRPSAEDANARAICCSCWSTLNIFHRFYQEVEKAHTRLVKVKLPIEDDVFDADHFEAYNDFFSKDVKVEAYEDPKLEALQYDKENPQNPNRSKSDSESDVPLVRLSKQRSSTRNHSYEQVTADDSDSVSSTNKRTRKLRIPDNDRDYESPKSKLKRIVPDDSTYNKRKISCKEFDKIIKQNMKLSCEICRKPVASFFVLKEHYRSVHNETGYVNCCDKKFNSRHTLVQHILLHQNPDFYKCEKCGKILSNMKGLKNHMKKHLHDKHIYQCDTCKKSFCKMEKLERHMKTHVSAEQICEHCGKVIRGRHSLKQHQLREHSGIPRQRVQCEKCGVYLADSSSRSFHMKYQHPEKDVVHVCNICGKISTSGYGLKRHILYMHKCGRPHKCAMCEKAFKTAQKLRPNVDDVNAKVICTSCWGALDTFHKFYLQIEEAHISLQKAIEKDELKVENETALLIGVVDPDPFDVVASELLDADIKLEVPEDATEIKPPLEAVQCEGEKKTGYLKDSPPKRKHSTDSKKSTDSEAAPAATRSTRSRTAEKAYAASDSSSDDDHEDDKGEVERQNSPDWQNANTDNDDDDSDYEDLASKAKKQKVLTNATKKRGRPKKGEVRETPRKKKRTTEEHSKKMERIQEYDEMIAKNMKLTCTICLGAFPNFNVLKRHYRTVHNECGYAVCCGKKFRKRGVLVDHIYTHQNPDYFKCEKCGRVLANRKGLDCHMLTHDTDKQRIYQCDQCTLSFYTRPLLTRHLQTHISERNIKCPECDKFFSTQDILRTHINNVHNAAYTRICDQCGKSFRRPDAFRRHQLEHDGITQPLVPCEKCGVKLTSKYGLKRHMESMHPETEVTHVCNTCGKIAPSAAALQRHISYMHKMERKYKCPMCDKAFKKTGGLKPNKNDEDAKFICGSCWNALESFHKFYLQVEEAHISLVKTRTTADDALKQEDDQIATSTEAEDTEKFDPCTDFLSADVKLEVKEDVEVCLPQYNPLPDLEEKIDVSQISKRKEISDSSDSESEIPLANLAKARSKRSKTKAATSSNDDAESSPEWQDHHSDDDEDEDDDDESVFEVKELASKRKAVTKTGKKRGRPCKNAPKNTTPKQTTEEQIKKRELSQEYDEIIQKNMKLSCTVCLLPLANFFILKKHYRSKHNERGYASCCGKKFLKRGILVDHIYTHLNPEHFKCDKCDKVLADRRCLEVHMNTHITEKQRIYQCDQCCKSFFKKPLLTRHLHIHIPEEERKFPCEECNKFFPSNYTLRAHINNVHQNAYAKICDQCGKSIRGREAFQRHLLEHAGVPIPSVQCDKCGAKLKNKYGLKRHMNSMHTESNVPHVCNICGKVAPNPAALQRHYSYVHKCERNHKCPMCDKAFKKAGGLKEHMTTHTGEVLYTCPHCPKTFNSNANMHSHRKKMHRKEWEENRRHPHMGSATNAE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-