Xsyl020048.1
Basic Information
- Insect
- Xylota sylvarum
- Gene Symbol
- br
- Assembly
- GCA_905220385.1
- Location
- LR999959.1:72687353-72688913[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.7e-15 1.9e-11 44.0 0.0 3 43 288 328 286 330 0.91 2 3 0.0069 17 5.8 0.0 27 37 359 369 350 374 0.87 3 3 1.8e-17 4.4e-14 52.5 0.0 3 41 397 435 395 437 0.93
Sequence Information
- Coding Sequence
- ATGAATCATCTAAAATGGATGGGCCATACGGCAACCATCCTTGATATCCAGAAAACTCTCAAACATGATGCATCCACTTGTGACATTACCCTTGCCTGTCGGGGTAAATCAGCGAAGGCCCATCGATTCGTACTGTCATCGTGTAGCGATCTACTACGTGATCTTCTTAGTGATGTACCCACAGGACAAGAAGCCACCATAATAGTACCCGATGTTAAAGGGAATCTACTTGACTGTGTATTGAGTTTCGTGTATATGGGAGAGACGAGCTTGTCGTCAACTAATTTGTCTGAATTTCTCGAGGCCATCAGTATACTTGGCATAAAGAGTGCCATTAGTTTTGAATGTGCTAACAGTAGTTCGGCCAATAGTAGCAAAAATGTAGCCGAAATGACCGATATGGAGGAGGAGTTGATGGAAGCCGAACCAGAGCAGGAAATTGTTGaaaaggacgaagaagaggATCAAACTGTTGCAGAAAGTAACAGCGTACGTGAATTAGAATTCCTTGAAGTCTACaatgaacaagaaaaaattaGCTACACGATCGAGAATATCACCCCAACCAATCCCAACGAATACATCCTCACAGAAAGTTCTGGTACCTTCACCCTCACACCAAATGCAAAAATCGAAGCCACTGAAGTGGGCGCACTTGTTGAAAAAAGCGAAGAAGACAATCCCATGATGGAACACTATGTAGGCGATCCAATAGGCGATAGTAGCCAGTGCTCAAGCACAGACTTGAAAGAGGATAAGTCTAGTAAAAATCTAAAAGATGAATTTAGTGAATTCCAAGCGCTCAGTCCGGAGGATTCCAAAGGATATCAAAACTTCAACGAAACCCAATCGGCTCGCGTCGAAGCCTTGGAGAATGCCGTTCTTGCTGTTGTTGACGAGGGTATGAGCTTACAGAAAGCCGCCATCAAGTACAATATCTCAAAGACTGTTCTCTGGCGACGAGTGAAAAAGCATCCGCTTTACATGAAAACAACACGTGAGAATCCGCTTATAACAGCAGCGTGTGAGCGTTTAAAAAATGGGGATTCTTTAAAAAGCATTAGCCAAGCACTAGATATTCCCATGTCTACATTACATCGACACAAAGTACGGCTTGCACAGGAAGGAAGATTACCGGAATATGTAACATTCAAGAAACGCGGTCCTATGTCGAAAGAAATGTTAAAAGAAAAGCTCACAAAAGCAGTACAAGCTTGTCTAGGCAATGGAATGTCGCAGAATCATGCGGCAAATGTGTTTGACGTGCCAAAAAGCACATTATGGCGacatttgcaaaagaaaatgtACCGGGCAGATAGCTCAAATGATATAAGCATTAAGGAGGAAGTAGTTTTACCCTAG
- Protein Sequence
- MNHLKWMGHTATILDIQKTLKHDASTCDITLACRGKSAKAHRFVLSSCSDLLRDLLSDVPTGQEATIIVPDVKGNLLDCVLSFVYMGETSLSSTNLSEFLEAISILGIKSAISFECANSSSANSSKNVAEMTDMEEELMEAEPEQEIVEKDEEEDQTVAESNSVRELEFLEVYNEQEKISYTIENITPTNPNEYILTESSGTFTLTPNAKIEATEVGALVEKSEEDNPMMEHYVGDPIGDSSQCSSTDLKEDKSSKNLKDEFSEFQALSPEDSKGYQNFNETQSARVEALENAVLAVVDEGMSLQKAAIKYNISKTVLWRRVKKHPLYMKTTRENPLITAACERLKNGDSLKSISQALDIPMSTLHRHKVRLAQEGRLPEYVTFKKRGPMSKEMLKEKLTKAVQACLGNGMSQNHAANVFDVPKSTLWRHLQKKMYRADSSNDISIKEEVVLP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00311727;
- 90% Identity
- iTF_00310168;
- 80% Identity
- iTF_01542344;