Xseg007900.1
Basic Information
- Insect
- Xylota segnis
- Gene Symbol
- -
- Assembly
- GCA_963583995.1
- Location
- OY757237.1:77144123-77151493[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.6 2.7e+02 2.3 1.4 3 21 744 762 743 766 0.92 2 11 0.018 1.4 9.5 0.2 2 20 788 806 787 808 0.92 3 11 0.64 49 4.7 0.5 1 23 828 852 828 852 0.91 4 11 0.015 1.1 9.8 0.3 1 23 857 881 857 881 0.93 5 11 0.31 23 5.7 0.2 2 23 909 930 908 930 0.92 6 11 4.7e-05 0.0035 17.7 1.7 2 23 976 998 976 998 0.97 7 11 0.076 5.8 7.6 0.5 1 21 1003 1023 1003 1024 0.86 8 11 1.5 1.2e+02 3.5 0.9 2 23 1052 1073 1051 1073 0.92 9 11 0.014 1.1 9.9 5.4 2 23 1087 1107 1086 1107 0.97 10 11 8.6e-06 0.00065 20.0 4.8 1 23 1113 1136 1113 1136 0.97 11 11 0.26 20 5.9 0.7 1 13 1154 1166 1154 1170 0.90
Sequence Information
- Coding Sequence
- ATGCTCGAAGAGGACCTCGATGATACACACTTGTGCATCAAGTGTAGTGCCACAATTGTCGGCCTTGATAATTACGTCCAGCATCGCAAAACGAATTGTGGCGGCAAGGCATCGCGCACGACCATTGTGCCTGGCTATGGAGGATTTGATTATCCAGATACGTCGACCTATACCAAGTCGGACGCAACTGGGGGCAAGACGTCGAAGGCCTTAAGTGATCCATATGACTTGCCGTATGAGCTCGGCGCGGATGTATTTTTCTCATCGCTGCAATTGCAAAGCGTTCAAGCGAGTAGTGGGGGGAAGACAGGCAACTCTGGCCAACAAATCCTCACGAGAAAAACCACTGCAACTCTGCTGTCAACTGGTCGAGATGAGACGGAGGGtgactggcaagaagaggcccACAACAATGCCGATAACTTGATGAAGGTTGTCCGAGATATTAGTGAAACGAAGAAGTTCGAACCGATTTTCAAGCCAATTGCCTTCACGCATGAGTCCCCTGAGCCTGACCAGCAGAGCGAcgataacgatgatgatgacgaggacttcgacgaagatgatgatgaagatgaagactATGTACCAACTCCGTACAGTGGCGGCAAATGGAAGCCGGGTAGTCAGCCGGCTCCAAGGAGTGGagcaaaatggaaaaataaagcCCCACCACCTCATGCGGGAGGCAAATGGAGTAAAACTTCTGGAAAAGCTGCACAAGGGCATGTAGCACCTAAAGCAGAACCACCTCCGTCAAGGAATTTGCTGTCCCAAATTCGAGCGAAACTCAAGGCGAGTAGTGGGTATACTCCTAAATACACAACAGATGGTCTTGCATCCCCTGAGATTCCAGAAACAGGGAGCAAGTGGAAACCAGGCTTTAAAAAATTCCCCTCAGGTGGTAAGTGGAAGTTACCCGAAGCACCAGAGTCCCAAGAGGTCTTGGAAGCTCAAACTGATGGAAAGTGGAAGCCGGGGTTTTTGAAACCATCTACTTCTGGTGTTAAATGGAAGGCACCCGAGTGTCAAGAGTCGCCAGAAGTTAAGTGGAAGGCACCCGTAGGCCAAGAATCACCAGAAGTCTTTGACCCTCAAACTAGTGGAAAGTGGAAATCTGCCGGCAAACAAAAGTCAGCTGACGTGCAAGAAGCAGCACCAGTTGTAGAGCTCCAGTCAGGAGGGAAGTGGAAGTCGGACTTTTCTATTCCTGCTGCTAAGTCAAAGTCGCTCGATGTTCAAGAATCAGATGTTTTGGAATCTCAAACTGGCCAAAAATGGAAGTCCCCCGAGAGAGAACCTTCAGATGTCTTAGAAGCTCACACTGGTGGCAAATGGAAGCCGGGATTTTCCAAATTACCTTCCTCTGTTACCAAGTGCAATTCACACGACGTCCAAGACTGGGAAGTGGAATGGGATGGCAAATGGAAGCCTGGATCCTCGAAATCTTTAAAATTTATCGCTGCGCCACTTACCGGTGCTAAATGGAAACCTTCCGGAGGTCAGGATTCACCAGACGTCATTGAAACTCACACCGGTGGGAAGTGGAAACCTGGTGACGTCCCATCAAGTGGTGGAAAGTGGAAGCCACCAGTACCGCCTGCATGGGACGATCAAGAGCCCTGGGTGGAAGTCGATGATACGCATCCCCCCGTAGAACATACCAAAGGAAAGTGGGTTCCCGGTACCAAAGTTGAAAGGTTGGAGTATAAAGAAGAGGTTCTACCGCCAGCCCATGACTTTTGGTGCAACATTTGCTGCCGCAAACTGAAGACCAAGATCATCTACGAAAAGCATCTCAAGTCTAGCTTGCACATGCGCAAATCCGCCACGGAGCAGCAATTAGAACGTGCAGCTGTCAAAGAGTTGGAACTCTGTCAGCAAATCCTTAGACCACCACCACTGCTTTTAGAGCGACCAAATCCCCCTGCAGCAGATTCTGGCAAACGGAAACGTCGCAAAACCTTTATAAAATGTGAAATCTGCAAGCATCGCATGCAGAAGTTCCTTGTGGGCAAGCACCTAATCTCTCATTACCACTACGTTCGAATGGCACTGAACCCTGAGGGATCCTTTCGCATGATCCTCGAAAACATCCACCAGATAGTTCTGCAGTCACCATTCCAGTGTACTCCGTGTCAGTTCTATGCGAATACCGAGGAGAACTTCCTGAACCACTGGAACTCAGTGGAGCATCGTGACAAGACCGAAGGTCCGGGCAAGTTCTGGTGCAGTTTCTGCCGGTTTGAGTGTGAAGACAACAATCAGATGAGGCGGCATCTACTGGGTGGCGACCACCGGGAAGTCATTCTAGCCATCAACCGGTCAGTTCCGATTTACATCAGCAAGAAGGTGACCATAGAGTGTCCAAAGTGCCGTCAGGGTTTCCGATTCAACATGGAATTGCGTCAGCACGCGACACGTTGTGACGGCGCTAAAGTGGTGCCAATTGGAACAGCCTCCGATGAGTATCAGTCGAGGTTCCGATGTGCATTGTGTCCTGACGAGGTGCTTAAGTCCAAGACAGCCTTACAGAGGCATGAGAAGTTTAAACACAATAAGCGGGGCTACTACTGCACCGTTTGCGGCGTGGACTTTGATAGTCCCACCAAGGCTGTAAAGCATCGTAAGACAATgtctcacaaaaaaaattcagccAAGAAATTGCATGAGGCAAAACGAGATGCGAACATAATGTCTGTCGATGAGATCTCTGAGGATCTGCGATGTGAAAAGTGTGGCCATGTGTCCACATCTGAAGTTGAAGCCATGCTGCATCAAATAGCTCATCCAGATTGTAGAAAAGAGGATGTTAGACCCACTGAGTCATCAGCTCCCAAGTTGTCAGTTATACAAACAGAACCTCCCAAGCCAGCGCCTCCAGACGAAACCAAAGAAGGCGAACCAGGAGGTAGTGGATACCGAAAGTGCGCCTACTGCAAGAAGTCCTTCAAAACCAAATTAGAACTCAAATCCCATCTGGACACAATCCACCCAGAGGCAAAGCACGTATGTCCCCTATGTGGAGAGGCATTTACCCTAGCACAAGAGCTCAGCTGCCACAGGAGGTACAAACAGTGTAGATCTTCTGCCTCAAAACCACCCAGTGAGCCTTCCCCGGCAAAAAAGGACTGTCCATTGAAAAAATCTTGGAAATGTTCAGATTGCACATTTTGCTCTGCCTATGAGTCGGAGCTCATATTCCATCGGATTATCCACACAGATGGCTTGCAGGCACTGGAAACTTCGGAAAAGCTGAAGTGCCCACTCTGTGAAAAATTATTCTCGAAACATTCACTTCGACATCATTTAAGGCAACATACCAACGAAAAGTTGTTCACATGCGAAATCTGTAAACGGTCATTCTCCCGGCGGCATAATTACAAGGAACACATGCAGTATCTGCACGCGGTTGGTGGTGTGAAGAAGCGCAAACGGGAACGCTCAACTGATGAGAAGTTTATTTGCGACACATGCGGGAAGCTGTTTCGGACCAAGCAGAAGGCATTCAAGAATGTAAACGAGATAGCAAATAACTCATTAGATCCTGGACACTTGCAGCACATGCAATTCATAACAAATCACGCTTATGACCATCGCAGGACTACCGGGTGGCACTGTACTGCTGGTCATTAA
- Protein Sequence
- MLEEDLDDTHLCIKCSATIVGLDNYVQHRKTNCGGKASRTTIVPGYGGFDYPDTSTYTKSDATGGKTSKALSDPYDLPYELGADVFFSSLQLQSVQASSGGKTGNSGQQILTRKTTATLLSTGRDETEGDWQEEAHNNADNLMKVVRDISETKKFEPIFKPIAFTHESPEPDQQSDDNDDDDEDFDEDDDEDEDYVPTPYSGGKWKPGSQPAPRSGAKWKNKAPPPHAGGKWSKTSGKAAQGHVAPKAEPPPSRNLLSQIRAKLKASSGYTPKYTTDGLASPEIPETGSKWKPGFKKFPSGGKWKLPEAPESQEVLEAQTDGKWKPGFLKPSTSGVKWKAPECQESPEVKWKAPVGQESPEVFDPQTSGKWKSAGKQKSADVQEAAPVVELQSGGKWKSDFSIPAAKSKSLDVQESDVLESQTGQKWKSPEREPSDVLEAHTGGKWKPGFSKLPSSVTKCNSHDVQDWEVEWDGKWKPGSSKSLKFIAAPLTGAKWKPSGGQDSPDVIETHTGGKWKPGDVPSSGGKWKPPVPPAWDDQEPWVEVDDTHPPVEHTKGKWVPGTKVERLEYKEEVLPPAHDFWCNICCRKLKTKIIYEKHLKSSLHMRKSATEQQLERAAVKELELCQQILRPPPLLLERPNPPAADSGKRKRRKTFIKCEICKHRMQKFLVGKHLISHYHYVRMALNPEGSFRMILENIHQIVLQSPFQCTPCQFYANTEENFLNHWNSVEHRDKTEGPGKFWCSFCRFECEDNNQMRRHLLGGDHREVILAINRSVPIYISKKVTIECPKCRQGFRFNMELRQHATRCDGAKVVPIGTASDEYQSRFRCALCPDEVLKSKTALQRHEKFKHNKRGYYCTVCGVDFDSPTKAVKHRKTMSHKKNSAKKLHEAKRDANIMSVDEISEDLRCEKCGHVSTSEVEAMLHQIAHPDCRKEDVRPTESSAPKLSVIQTEPPKPAPPDETKEGEPGGSGYRKCAYCKKSFKTKLELKSHLDTIHPEAKHVCPLCGEAFTLAQELSCHRRYKQCRSSASKPPSEPSPAKKDCPLKKSWKCSDCTFCSAYESELIFHRIIHTDGLQALETSEKLKCPLCEKLFSKHSLRHHLRQHTNEKLFTCEICKRSFSRRHNYKEHMQYLHAVGGVKKRKRERSTDEKFICDTCGKLFRTKQKAFKNVNEIANNSLDPGHLQHMQFITNHAYDHRRTTGWHCTAGH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01542578;
- 90% Identity
- -
- 80% Identity
- -