Basic Information

Insect: Xylota segnis
Gene Symbol: ush
Assembly: GCA_963583995.1
Location: OY757239.1:31378958-31385834[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.013 0.96 10.0 0.0 1 20 202 221 202 223 0.90

2 9 0.00025 0.019 15.4 0.8 1 23 268 290 268 290 0.98

3 9 0.027 2 9.0 1.0 2 21 315 334 315 335 0.92

4 9 0.043 3.3 8.4 2.9 2 21 708 727 707 728 0.93

5 9 0.0078 0.59 10.7 0.0 3 21 765 783 763 784 0.92

6 9 0.059 4.5 7.9 0.1 1 23 831 853 831 853 0.97

7 9 0.013 0.95 10.1 1.3 1 23 859 881 859 881 0.99

8 9 0.00016 0.012 16.0 0.6 1 23 955 978 955 978 0.96

9 9 0.16 12 6.6 1.0 2 20 1111 1129 1110 1131 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.013	0.96	10.0	0.0	1	20	202	221	202	223	0.90
2	9	0.00025	0.019	15.4	0.8	1	23	268	290	268	290	0.98
3	9	0.027	2	9.0	1.0	2	21	315	334	315	335	0.92
4	9	0.043	3.3	8.4	2.9	2	21	708	727	707	728	0.93
5	9	0.0078	0.59	10.7	0.0	3	21	765	783	763	784	0.92
6	9	0.059	4.5	7.9	0.1	1	23	831	853	831	853	0.97
7	9	0.013	0.95	10.1	1.3	1	23	859	881	859	881	0.99
8	9	0.00016	0.012	16.0	0.6	1	23	955	978	955	978	0.96
9	9	0.16	12	6.6	1.0	2	20	1111	1129	1110	1131	0.92

Sequence Information

Coding Sequence: ATGGTGAGTTGGGTCAACAAGCAGTGCTGTGCATACAAACGTGCATATATGGGAAAGAAGTTTGTTGAGGAGGCAATATTGCACCTGGAGGCGAATGAGATAGTTACCAGTCACAGTCACGATACAAAGGATCTTAGCCCAAGCGATTTGAATGAGCAAGCCGATGCGGCGTCTTCGGCGGATATAGACCAATCGGCTGAACCGCGAACCCCGTTCACAACTGAATCACTGATGGAAGACAATCGTCCATCGTCGAGTACACCTCGAACATTATCACCGCCCTCGGAACCGGAAGCAGATGACCAACATCCACTTTCGGTTCGATCGGATTTACACTCGGGGGCGAATTCTCCCTCAGAACATGATGATTCATCAATAGTTCCTGCTGTCGCTGTTGCTGCGATTCCTAAGCTACGGCTAAATGCACTCTTAGCTTCTGATCCCGCCCTAAATCCAGATGCAAGGAATTTGAAATTACTTCATGAGGAATCAACCAAGAATCACCATCACGAGGAAACTGTCTCAGCACCTATTGCTGATCCCAAGGTTGTTGTGAAAAACCAAACATCAACTGTGGTGGATAATGCACAGCGGGTTAAGGTGTTTATGTGTCTTCCCTGTGGCATTGGTTTCTCATCGAGATCGACTTTGGAGGCGCATCAAGCATACTATTGTTCCCACAGaaaagaaGCCGAAGAAGATCCAGCTGGAGGAGGCGCCGGTAGTGCTTCGTCAGGCGATAAGAATTCCACCATAACATCCGGTGAGCCATCAGCGAAATCCATTAAGACTGGCAAGCAATACGCTTGCACACAGTGCTCCTATAGTGCCGACAAAAAGGTCTCGTTAAATCGTCACATGCGTATGCACCAAAGCTCACCGGCGCCTAGTTCGAACGCCTCGAATGGTGGCGATGATAGTTCTAGTCAACAAATCGATCGTTACTGCTCTGAATGTGATATTAGATTCTCGAATGTAAAAACGTATCGGGCGCATAAGCAACACTACTGTAGTTCCAGACGCAATGATGGCCAAACGACACCAAAACTAGCAGAACCAAGTTTAAAAACTAGTGGTGGCTCAGTTAGTCCACCGCAGGCGCGAACGAAAACACCAACACCAGCCGCTGTGGTagcagctgcagctgcagcaGCGGCCGCCGTAACACCACAGCCATTTATTGCACTTCCGACGAATCCCATTCTAATTATTCCATACTACTTGATACGAGCGGCCAGTATGATACCGGGACCATTAACATCGGTATCGTCTGGCATTGCGAATCCGGAAAGTACATGTTTCTCACTAGAAAATGGATCTCTTAAGCCAATGGCCACCGCCTTAAGTACCAGCAGCATTACGAACAACCAAATTCCGCATGTTGATACGACAACACGATCACATCCTCCACCAGCAAGTACTTCATCGAATAATGATTCTGGTACAGCAGCACCGTtactaacagaaaaaaatgCACGTGCCGCGTCTGTGAATAGTTGCAGTGAATCTATAAAGTCAAGCAAAAAGGATGGCGCTGTGAGAGATTTTGCGCCTCTGGATCTTTCACTACGACGCTCTCCCATTCAAAGAGCACAGCGAGTGCGTTCGTCGTCTAGTTTCATGCCTCCAGGTGATGATAGAATCGATATCGAGAATATGATGGAGGGCAAAGAAAATCTATCCATTGACAGTGGTAGTATGACACCCGAGCAAATCGTATGTGCACCATCTCTACCCAATAGTCCTTCCATGAGTCCATCCCCGAAGAGAAGAGCTCTCAGTCCCCGGAGTAGCAGTGCTGCTTCAATGTCACCAGTACCGCCATCGGTTATGGATCACTTACCCCTGAGATCGATTCTCCCCGCTGATATTGCCATGAAACTGACTGAGTCGAATATAATGCCACCACTGATCGCCAAACAGAATCTCGAGTTGGCGTTCAAATTATCTTctgcatcagcagcagcagctgctgcaGCGGCCGCTGCTTGTAACAGCAAACAAACTGAATCTGGAAAGACGGCCATGAGTAATTCACTTTTAGGTCTTCCCGCTGCGCCTATTAGTGTGGGGGGAGTATCCAGCGGACAGCCACAGATTTTTGTCAAACAGGGCGTATCTAAGTGTAAGGAATGCAACATTGTCTTCTGCAAGTATGAGAACTACTTAGCCCACAAACAGCACTACTGTTCGGCAAGGAACCAGGAGGACAGCGAAAACAAGATTAGTACTCCGCCATCGGCATCCAATTCGGGAGTGGAAACCAATCCAATCGCTTATCAGCAGTTGATCTGTGCAGCCTGTGGCATCAAATACACTTCACTTGATAACTTGAGAGCTCATCAGAAGTTCTATTGTCCCAAAGGTGGAGGTGATGGGTCTTCAACTACACCGCAAGTCACAAAGGAAAAGTGTTCTAAATGTAAGGTTCTGCATGAAATCGGCCAGCCCTGCCCTCCAATAGCTGCAGCCGCACAGCAACAAGGCTCCTACAAGTGTCCTGTTTGCGATGTCGTCAGCTTAACGGCTGGCGAAAATCGAAAACACCTCGAAACACATGGTAGTGTCAAGGCGTTTCGTTGTTCCATTTGTCGATACAAAGGAAATACATTACGTGGAATGAGGACACACATTCGGATGCATTTCGACAAGAAGACTTCCGACTTTAACGAAGAGAACTACATGTCGTGCATTTTGGAAGATGATGGTTTGGAGATTCCTAGTCCAGTGTCTCTAAATCAGGACCAGCTCTCACAATTCGCTGCAGCTgctcaacaacaacatcaacagcacCTGCTGCAACAACAGTCATCagcgcaacaacagcagcagcaacattcGCCACAGCACCCCCAACAGATATTCAACTGCGAGATTTGCAACTACTCATCGTCATACAAGGGCAATGTGATGCGCCACATGAAACTGGTCCACTCGCAACCTGGCACATCGCCTTCGATTTCCCCCGAAATAATGATGGAAGAAGGTGAACCCGCCACTCATAGTTTAAACGGAGACAATGGCAGCAGTCTTTCCGAAGGtTTTACCATAAAAACGGAACCACTAGACCCACCCGCTGCTCCCACACTAactaaaaacaataacaattctaccccaaatcatcatcatcatcacctgGAACCATTGGCGCAGATCAAATCAGAACCAATGGAAATAACCGATGCCAACATTCGATCTCTTTCGTCTCCACTATCTATTCCACCGCCACCGCTTAATTCATCATCTCCTCTATCTGGCGATGAGAATTCATTGCTAAGGAATTCTACTGCTTCAATTGGTGCCGGCGGCGGATTGGTTCCCAATCAGAAATATTGTCAAACTTGCGATATCACTTTTAATTATATGAAAACCTATCGAGCGCATAAGCAGTTCTATTGTAAGAATAAAACTCGAGGAGACGCTGATAGTCCGAGTCCGGTTCCACCAGTGGTGCAATCGCCGACTTTGTTAAACAAGAACAAGGAGAACTTGGAGGCGACTATATTATAG
Protein Sequence: MVSWVNKQCCAYKRAYMGKKFVEEAILHLEANEIVTSHSHDTKDLSPSDLNEQADAASSADIDQSAEPRTPFTTESLMEDNRPSSSTPRTLSPPSEPEADDQHPLSVRSDLHSGANSPSEHDDSSIVPAVAVAAIPKLRLNALLASDPALNPDARNLKLLHEESTKNHHHEETVSAPIADPKVVVKNQTSTVVDNAQRVKVFMCLPCGIGFSSRSTLEAHQAYYCSHRKEAEEDPAGGGAGSASSGDKNSTITSGEPSAKSIKTGKQYACTQCSYSADKKVSLNRHMRMHQSSPAPSSNASNGGDDSSSQQIDRYCSECDIRFSNVKTYRAHKQHYCSSRRNDGQTTPKLAEPSLKTSGGSVSPPQARTKTPTPAAVVAAAAAAAAAVTPQPFIALPTNPILIIPYYLIRAASMIPGPLTSVSSGIANPESTCFSLENGSLKPMATALSTSSITNNQIPHVDTTTRSHPPPASTSSNNDSGTAAPLLTEKNARAASVNSCSESIKSSKKDGAVRDFAPLDLSLRRSPIQRAQRVRSSSSFMPPGDDRIDIENMMEGKENLSIDSGSMTPEQIVCAPSLPNSPSMSPSPKRRALSPRSSSAASMSPVPPSVMDHLPLRSILPADIAMKLTESNIMPPLIAKQNLELAFKLSSASAAAAAAAAAACNSKQTESGKTAMSNSLLGLPAAPISVGGVSSGQPQIFVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEDSENKISTPPSASNSGVETNPIAYQQLICAACGIKYTSLDNLRAHQKFYCPKGGGDGSSTTPQVTKEKCSKCKVLHEIGQPCPPIAAAAQQQGSYKCPVCDVVSLTAGENRKHLETHGSVKAFRCSICRYKGNTLRGMRTHIRMHFDKKTSDFNEENYMSCILEDDGLEIPSPVSLNQDQLSQFAAAAQQQHQQHLLQQQSSAQQQQQQHSPQHPQQIFNCEICNYSSSYKGNVMRHMKLVHSQPGTSPSISPEIMMEEGEPATHSLNGDNGSSLSEGFTIKTEPLDPPAAPTLTKNNNNSTPNHHHHHLEPLAQIKSEPMEITDANIRSLSSPLSIPPPPLNSSSPLSGDENSLLRNSTASIGAGGGLVPNQKYCQTCDITFNYMKTYRAHKQFYCKNKTRGDADSPSPVPPVVQSPTLLNKNKENLEATIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01223805;
90% Identity: iTF_01223805;
80% Identity: -