Xseg014059.1
Basic Information
- Insect
- Xylota segnis
- Gene Symbol
- ZNF212
- Assembly
- GCA_963583995.1
- Location
- OY757239.1:16706492-16709656[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.1 1.6e+02 3.1 0.2 1 12 72 83 72 92 0.81 2 12 0.21 16 6.2 0.1 2 19 133 150 132 153 0.86 3 12 0.012 0.88 10.2 1.6 1 21 195 215 195 217 0.94 4 12 0.01 0.77 10.3 4.6 2 23 243 264 242 264 0.96 5 12 0.00013 0.01 16.3 1.6 1 23 289 310 289 310 0.98 6 12 0.0012 0.092 13.2 1.8 1 23 316 338 316 338 0.96 7 12 0.012 0.92 10.1 0.6 1 23 357 379 357 379 0.97 8 12 8.3e-07 6.3e-05 23.2 3.8 1 23 385 407 385 407 0.98 9 12 0.0087 0.66 10.6 2.2 1 23 413 435 413 435 0.97 10 12 2.9e-06 0.00022 21.5 2.5 1 23 441 463 441 463 0.98 11 12 5.2e-06 0.00039 20.7 0.2 1 23 467 489 467 489 0.98 12 12 0.036 2.8 8.6 0.4 1 23 501 524 501 524 0.93
Sequence Information
- Coding Sequence
- ATGTCAGAAGAGTTTGTGGAAATCTCGCCTGGTGACGATAATATTGAAATTATCGAAGAAGATTACATTATTGAAGATATAGATGATTCCATTTACACGGTGGATATAAAACAAGAGGAAGAACAAACCGATGATGGCGATACTTTTGCGGAACGCGAGGAATACGGACAAATTGTCTATTTGGGAAAAGAGGATGGCACTGACGATGATGTATACCATTGTGCACTTTGCAACATAACGTTCGCTTCCATCGAACAACATATAAAGGAAAACCATAGTGGAAGTGATGTTGAGCAGTATGATTCCAATAATCAAATGATAGTGGAGGAAGAGACGGAGGAGGAATTGGGTGTTTTAGACGAACTAAGTCCACACGACTTGgaaacaacGGACATTTCTTGCAAAATCTGTGGAATAATATTCGATACTGTGCAAGATGTAGAATTACATGAATGCGAAGGATTTAATTTGACTCGAACAATTATTTGTTGTAAATGCCAAGATCAATTCGATAACGATGCTGATATGGAATCTCATCTGTGCCAGCCGAAAAGtatggaagatgaacattttgaTATCATGTTTTCTTGCTCTGGTTGCCCCAGAAAATTTGCGCTTATAACGGACCTTCAAGAACACCAAAAGTGTCATAAACCAAGGAGAAGTCAAgtgaaaaaagataaaaaagttCATGGGGACGACGGGACGGACCAAAGTGAAAAAATTCACTGTGAGATCTGTAATACAACTTTCTCTTGTTCTAAGAATTTAAAATTACATGCAAAAATGCATCTGACTATCCCGACCAAAACAATAAAAGATGCAATGCCAATTGGCGCTGATGAACCAAGCgataaaaaccaattttattgcGAAATCTGTAACAAGAGTTTTGATCATGCGCTGCTTTCTGTTCACCAAAATATGCATCAGAATGTCGAGGAACATAATTGTAGCATATGCAATCGTCAATTCGAGAATCAGGTTAGCTACGACATGCATATGCAATTGCATGCCGATCAACCAACACGTGCTCGTTCACAGAAAGTTGCAAAACCTGGAGCAAGATTCGCATGCAACTATTGCGGAATAGAGTTCTTAAGACCGCACGAGAAGGTAAAACACGAGCGTATACATACAGGTGAGAAACCACATGAGTGTGAGGTATGTGGAAAATGCTTCCGTGTTTCATACTCCCTTACCTTACACCTGCGTACGCATACTGACGTAAGGCCATTCGTATGTGCCCAGTGCAATAAAAGGTTTAAAGCCTACGCCGTATATTCTCACCACCTGAACACTCACTCCGAGGACCGTCCATATAAATGTCCCATGTGTCCAAAATCATTCCGAACTTCAGTACAACTGTGTGGTCATAAAAATAGCCACACCAAACCTTACAATTGCCCGGAGTGCAATAGACCATTTGCCAGTTTGTATGCAGTAAAAATGCACATGAAAACTCATAATAAAGCGAACAAAtctaatgaaaatttaaaacatcGTTGTGGAATATGTGGAGCAGTTTACGCACGAATGTTTGCTTTGCGATTTCATATAAAGGAGCAGCATTCAGCTGATTTAACAGAGGAGCAGGAGAAAGATCTAAATAATGACAAGAAACCGCCGATTACTGCTGATGATTGTTTTAATGAGGACGAAGTTTCTACACAAGCCATTTTGCAAGAAGAGACAATTATAGATACCTTTCACACGGAGGAAATTGTTACGGATTGGCTAACGGAAAAATGA
- Protein Sequence
- MSEEFVEISPGDDNIEIIEEDYIIEDIDDSIYTVDIKQEEEQTDDGDTFAEREEYGQIVYLGKEDGTDDDVYHCALCNITFASIEQHIKENHSGSDVEQYDSNNQMIVEEETEEELGVLDELSPHDLETTDISCKICGIIFDTVQDVELHECEGFNLTRTIICCKCQDQFDNDADMESHLCQPKSMEDEHFDIMFSCSGCPRKFALITDLQEHQKCHKPRRSQVKKDKKVHGDDGTDQSEKIHCEICNTTFSCSKNLKLHAKMHLTIPTKTIKDAMPIGADEPSDKNQFYCEICNKSFDHALLSVHQNMHQNVEEHNCSICNRQFENQVSYDMHMQLHADQPTRARSQKVAKPGARFACNYCGIEFLRPHEKVKHERIHTGEKPHECEVCGKCFRVSYSLTLHLRTHTDVRPFVCAQCNKRFKAYAVYSHHLNTHSEDRPYKCPMCPKSFRTSVQLCGHKNSHTKPYNCPECNRPFASLYAVKMHMKTHNKANKSNENLKHRCGICGAVYARMFALRFHIKEQHSADLTEEQEKDLNNDKKPPITADDCFNEDEVSTQAILQEETIIDTFHTEEIVTDWLTEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01542440;
- 90% Identity
- -
- 80% Identity
- -