Basic Information

Insect: Xylota segnis
Gene Symbol: -
Assembly: GCA_963583995.1
Location: OY757237.1:4152663-4154737[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.5e-05 0.0011 19.2 1.8 5 23 272 290 269 290 0.94

2 9 1.3e-07 1e-05 25.7 1.1 1 23 296 318 296 318 0.98

3 9 0.00019 0.015 15.8 2.8 1 23 324 346 324 346 0.98

4 9 1.7e-06 0.00013 22.3 1.6 1 23 352 375 352 375 0.97

5 9 0.00026 0.02 15.4 2.0 1 23 385 407 385 407 0.97

6 9 0.00035 0.026 15.0 5.1 1 23 480 502 480 502 0.98

7 9 0.00048 0.036 14.5 1.7 1 23 510 533 510 533 0.96

8 9 0.045 3.4 8.3 0.0 3 23 543 564 542 564 0.94

9 9 0.003 0.23 12.0 3.1 3 23 571 591 570 591 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.5e-05	0.0011	19.2	1.8	5	23	272	290	269	290	0.94
2	9	1.3e-07	1e-05	25.7	1.1	1	23	296	318	296	318	0.98
3	9	0.00019	0.015	15.8	2.8	1	23	324	346	324	346	0.98
4	9	1.7e-06	0.00013	22.3	1.6	1	23	352	375	352	375	0.97
5	9	0.00026	0.02	15.4	2.0	1	23	385	407	385	407	0.97
6	9	0.00035	0.026	15.0	5.1	1	23	480	502	480	502	0.98
7	9	0.00048	0.036	14.5	1.7	1	23	510	533	510	533	0.96
8	9	0.045	3.4	8.3	0.0	3	23	543	564	542	564	0.94
9	9	0.003	0.23	12.0	3.1	3	23	571	591	570	591	0.96

Sequence Information

Coding Sequence: ATGAATTTTAAGGTCGATATTTCTGTGTGCAGAGTGTGCATGAAGTCCGAAAATGGTATATCACTATTCAAAGACCGTAGTCTTCACGAGAAGTTTGTTTACACCACAAAACTTATGGTCAAAGAGCAGGACAGCATGCCAGCAATATTATGTGGCAAATGCATAGCACGGCTGAAAATCGCTTACGAGTTTTGTCGCTTGGCGAATTCCTCCGAGAAACACCTGAGGaggtttataaataaaattagctCTGACTTCCAGGAAGTGACAAAAACATTACCCCAAGATGAGTACGCAGTTTTGGAGGAGGATGACAGCGATATTAATGCACTTATTGACGAGGCAGGGGGATTTGAAGAAATCGGTGAGCCTCCAAGGCAACTCAAGGAAGAGTCGATGACGGCCACTGAGGAGTTGGAGGTGATAGAAGTGCCGGAAGAGAGTTCTGCGACAAAGCAGGAGGTGTTCGAACATGAGATTTATATGGAGGAGTTTCACGAGATAATCCAGGAGGAGGATTGCGACACCAATCTGTACTTGGATGAGAATTCCGCGGAGGAGTTACATTTGTATGAAGATGGTAATGAGTACTTTGACGATGTAGAGGGTGCGGAgcaggaagaagaggaggaggaggaacagTCAAATGTTGCAGAGCAGCAGGAAATGCTGTCTAGCATTGAGGACAGCGAGGCAAAGGAGCCTCAGAAGGAGGAGAAGAAGGCCGGGAGGAAAAGAAGTTCGCGCTCAGCTAGGAGGGCGAATGGTGAAACAGCAGCTGCCAAACTTGAAGGGAAGTCCAATATCTGCATAAAATGTAATAAAGATTTCAGCACAAAGACCAACCTGATGCGGCACATGAGTACACACGATGGTGTGAAGCCGTATCAGTGTACCACTTGTGGGAAGGGGTTCACACAGAACGGGTCATTGAAGCAACATATGTTCATCCACACTGGTGAGAGACCACATGTATGCAATGTCTGCCAGAGGGGTTTCACACAGAGTAAGAGCTTGATATTCCACATGCGGCGGCATACAGGAGAGAAACCTTTCACTTGCGACGAATGCGGGATAAGTTTTCGACAGAAGGACGGACTGAAGCATCACGTTCTGAAGTACCACAGTGGTGCGCCGACTGCACCGGACCGGCATGTATGTTGCGTCTGCGACAGAGTTTTGGCTTCCAAGTATTCCTTGGGGGTGCATATGAGGAAGCACGCTGCCAGAACAGAAGATAAGAAGACAGATCAAGATTATGAACCAGAATCGACGACCTCTAGCAGCAAAGAAGAGTCCAGCACACCAACATCAACAGTACCCGCACCACCAACAAACTCAGGGGCATCGCAATTGGAAACTTCATCAGAAGTGCCTAGCGGAACTGTTTTACAATGTACAAGAGGCAACGCGGGTGCTGGTCTGCGAATGAAACAGTTTCAGTGCGGGAAATGTTTCAAGTCTTTTCACATCAAacGTAACCTTCTCCGTCATTTAAGAAACCACGACGTCAGTTCATTGGAGTTGCATGAGTGTGCCGATTGTAAGATCGGTTTCGACACAAAACGCTCTCTGAAGTTGCATCGTCAACGCGATCACAAGGACGTAATACCCGACTTGAACAATTGCGAATACTGTAACGCCCCATATGTCACGGTCGCTGATCTCAGTGAGCATATAGCCAACGTGCACGACGCAATTGAGCAGGACTGCCCCCATTGCAATGAGCACTTTAAATCGCAGAAACTGTATTACGACCATTTGCTGGAGCATGAACATATGCTAGAAGATTAG
Protein Sequence: MNFKVDISVCRVCMKSENGISLFKDRSLHEKFVYTTKLMVKEQDSMPAILCGKCIARLKIAYEFCRLANSSEKHLRRFINKISSDFQEVTKTLPQDEYAVLEEDDSDINALIDEAGGFEEIGEPPRQLKEESMTATEELEVIEVPEESSATKQEVFEHEIYMEEFHEIIQEEDCDTNLYLDENSAEELHLYEDGNEYFDDVEGAEQEEEEEEEQSNVAEQQEMLSSIEDSEAKEPQKEEKKAGRKRSSRSARRANGETAAAKLEGKSNICIKCNKDFSTKTNLMRHMSTHDGVKPYQCTTCGKGFTQNGSLKQHMFIHTGERPHVCNVCQRGFTQSKSLIFHMRRHTGEKPFTCDECGISFRQKDGLKHHVLKYHSGAPTAPDRHVCCVCDRVLASKYSLGVHMRKHAARTEDKKTDQDYEPESTTSSSKEESSTPTSTVPAPPTNSGASQLETSSEVPSGTVLQCTRGNAGAGLRMKQFQCGKCFKSFHIKRNLLRHLRNHDVSSLELHECADCKIGFDTKRSLKLHRQRDHKDVIPDLNNCEYCNAPYVTVADLSEHIANVHDAIEQDCPHCNEHFKSQKLYYDHLLEHEHMLED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01542431;
90% Identity: iTF_01542431;
80% Identity: -