Xseg009972.1
Basic Information
- Insect
- Xylota segnis
- Gene Symbol
- -
- Assembly
- GCA_963583995.1
- Location
- OY757237.1:131110025-131112075[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.8 60 4.4 0.5 8 23 186 201 177 202 0.76 2 13 0.0017 0.13 12.8 0.5 1 23 208 230 208 230 0.98 3 13 2.5 1.9e+02 2.8 0.2 2 10 236 244 235 246 0.84 4 13 1.6 1.2e+02 3.4 4.1 2 12 265 275 265 288 0.84 5 13 6e-05 0.0045 17.4 5.7 1 23 294 316 294 316 0.98 6 13 0.00027 0.02 15.3 0.5 1 23 322 344 322 344 0.96 7 13 0.065 4.9 7.8 4.8 2 23 350 371 349 371 0.96 8 13 0.00015 0.011 16.1 3.9 2 23 379 401 379 401 0.93 9 13 1.4e-05 0.001 19.4 3.1 1 23 426 448 426 448 0.99 10 13 1.3e-06 0.0001 22.6 4.1 1 23 454 477 454 477 0.98 11 13 5.2e-06 0.00039 20.7 1.1 1 23 483 506 483 506 0.95 12 13 2.9e-05 0.0022 18.4 0.6 1 23 512 534 512 534 0.97 13 13 1.5e-05 0.0011 19.2 0.4 1 23 540 562 540 562 0.98
Sequence Information
- Coding Sequence
- ATGAATGCCGGCGAAAATACATGCCGTACATGCGGAAAAACTTCCGAATTGGAAGATGGCTCGGATCTCTATCCGATGTACACTTCAACGGAGTATTACAACGAATTGAAAATGATCATAGAGGAGTTTGAAATATGGAATCTAAGAATTGCTCAAGGCGATGGCTTACCTCAGAAGATTTGCCTAACTTGTTTCGATAGTTTTTGTCAAATTCACAACTTTCGTATAATATGCCAGGAGGCGCAAATGAATTTCGGTGAACTGTGCACTGGTCTGGATATCATCATAAAATTAGACCACGAACTTGGTGATGCCGATGATGAATTTCCAGAAGATTTCGAAGGCGAACAAACTATTACCGTTCAAGAACACTATCAGTTTCCCGGTGATGAACGATCTCAAGAACAGGAAAAGAGAACATGTGATAAACTCTTGGAGACAATCTCCGATGATGAAGGGCGGaggaaaagagaaagagaagaagaagcaTTTGAGGAATTGAATGCATCAATGCCCGAGTTCAAGCGATTCCAATGTGAGTTCTGTATGGATATCATTGGTTTTGATGATCCCGATCTGTTGAATGAGCACTATAATGTCCACCACTCTTCGGATCAACCATATCCATGTCCCAAGTGCGACAAGTGGTTTAACACcaaggtaaaaagaaatagcCATGCTCGAGTCCATTATCGCATTATACTGGAGTGTGAAGTTTGCGGCAAAAAAGTGAGGGGAGGCAAGCGAATGATGGCTCAGCATAATGAATTCCATCACATCCAGAAAGAACGTGAATGTCATACGTGCGGAAAGAAGTTCGAAAGTATAACGTTGAAAAGATTCAACTACCACATGAGTTGGCACGACGAGACCAAGTTGCACAAATGCAAGTATTGTGATAGGAAGTTCATCCAGACTACACATTTGGTGGTACACGAGAGAACCCATACCGGCGAAAGTCCTCACATATGCAGTAAATGTGGAATGGGATTCATGAATAATGTTCTTCTAAGCAACCATATGGTGATGCATGGTGCCAAGGAGTTACAGTGTCCTCATTGCCCTAAAAaACTTTACCACATACACGGCTACAAGCTTCATTTGAAATTACACGATCCGAATAGGAAGAAACCGCGCTGCGAAATTTGTGATAAGACATTCAACACAAAATTCAGTTTGCGTGTGCACAATCACAAAAGTCATGATGTACCAGCATCACCGGATGTTCTAACTTTTTTGCAAAAacgtgaaaaaaagatttcgttCATAAAACCGTACAAATGTGAAAAGTGTCCGCAATCGTTTGTGTTGCATACACAGCTGATGAGACACTTAAAAACTCATGACGAGAATAGGCCATATTCTTGTGATCAATGTGGGAAATGTTTTAAACGAGAAGCACATTTAAAATTACACGTAAACACACTgcacttgaacaaaaaaccccaCAAGTGTACTTTGTGTCCACGAGCCTATCCGcaaaaaagtaatttaaagGAGCACATGGCCTTGAAGCACGAAGGGAAAAAAGATCACAAATGTGATGTTTGTGGAAAGGAATTCGCCATTGCCAGTACCCTACGGACTCATAAGCTCATACATTCGGAcctgaaaccatttgtttgcACCATATGCAATAAAGGTTTTAGGATGTTGAGCGTCTTGAAAATACATATAAACAAACATCTGAAGAAGAACGAAGCTGACGTTGCTGGAGGAGATATTACGGATATTGTTGTATGA
- Protein Sequence
- MNAGENTCRTCGKTSELEDGSDLYPMYTSTEYYNELKMIIEEFEIWNLRIAQGDGLPQKICLTCFDSFCQIHNFRIICQEAQMNFGELCTGLDIIIKLDHELGDADDEFPEDFEGEQTITVQEHYQFPGDERSQEQEKRTCDKLLETISDDEGRRKREREEEAFEELNASMPEFKRFQCEFCMDIIGFDDPDLLNEHYNVHHSSDQPYPCPKCDKWFNTKVKRNSHARVHYRIILECEVCGKKVRGGKRMMAQHNEFHHIQKERECHTCGKKFESITLKRFNYHMSWHDETKLHKCKYCDRKFIQTTHLVVHERTHTGESPHICSKCGMGFMNNVLLSNHMVMHGAKELQCPHCPKKLYHIHGYKLHLKLHDPNRKKPRCEICDKTFNTKFSLRVHNHKSHDVPASPDVLTFLQKREKKISFIKPYKCEKCPQSFVLHTQLMRHLKTHDENRPYSCDQCGKCFKREAHLKLHVNTLHLNKKPHKCTLCPRAYPQKSNLKEHMALKHEGKKDHKCDVCGKEFAIASTLRTHKLIHSDLKPFVCTICNKGFRMLSVLKIHINKHLKKNEADVAGGDITDIVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01541613;
- 90% Identity
- -
- 80% Identity
- -