Xseg010872.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylota segnis
Gene Symbol
-
Assembly
GCA_963583995.1
Location
OY757238.1:16641407-16650190[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.00056 0.042 14.3 1.0 1 23 217 239 217 239 0.97
2 17 0.00091 0.069 13.6 4.8 1 23 244 266 244 267 0.95
3 17 0.019 1.4 9.5 0.1 1 21 272 292 272 293 0.95
4 17 0.017 1.3 9.6 0.3 1 23 495 517 495 517 0.97
5 17 0.0023 0.18 12.4 0.9 1 23 522 544 522 544 0.99
6 17 0.00054 0.041 14.4 1.7 1 23 679 702 679 702 0.98
7 17 0.00016 0.012 16.1 1.4 1 21 708 728 708 729 0.94
8 17 6.2 4.7e+02 1.6 2.0 1 23 768 790 768 790 0.93
9 17 4e-06 0.0003 21.1 1.0 2 23 795 816 794 816 0.98
10 17 0.00077 0.059 13.9 1.0 1 23 822 844 822 844 0.98
11 17 2.8e-05 0.0022 18.4 0.3 1 23 850 872 850 872 0.99
12 17 0.36 27 5.5 0.6 1 23 1102 1127 1102 1127 0.95
13 17 0.021 1.6 9.3 0.2 1 23 1134 1156 1134 1156 0.98
14 17 5.3e-05 0.004 17.5 0.3 1 23 1161 1183 1161 1183 0.99
15 17 5.5e-07 4.2e-05 23.8 1.3 1 23 1189 1211 1189 1211 0.99
16 17 0.0032 0.24 11.9 2.3 1 23 1217 1239 1217 1239 0.98
17 17 0.00028 0.021 15.3 0.9 2 21 1246 1265 1245 1266 0.94

Sequence Information

Coding Sequence
atgaatgaaaaaaagacatTAACACAACCTTCCTGTTCCCGTAAAGTAAATGCTGGAGAAAAGAATGTCGACTTCTCAAATACATGTCGCACCTGCCTTCGGGGTATTACCGACGACAACTTCCACTTGATAGACGAGTCGATAAACTCTATTATTGAAGAATCAGCCGGAGTAATGGTTCTTAAGGAAAATCAAGACAAACTACCACAGCAGATTTGCAATGTGTGCTTCAAAGCTCTTCATTTTGCTTACGCTTTTAGACAAGAGTGCCAGAAAGTTGATGCACTGCTGAAGAGTTATGCACAGGAAAAGGAACCACACACTAGCAGATCATCCTCTGAAAGTGATGCTGAGGAACAGAGTGAAGGTATAAATCCActggaagatgaagatgaaccATTTGGTTTTGGCAATGAATCTGTGGAAGATAAAGAATGTTCGCCAGGAACAAAGGAGACAAAAAGATGGAAATTCATTTGTAGACTTTGCGGCTCGGTATGGACAAACATTAAAGCTATCATACATCACTATATGTCCCAACACGTCAACGGAAATGATCCCAATCAATGTCCTCTCTGCAGTTACAAACTGAAGCAAACAAATGCTCCGCGTTTACGCAATCACATCCTGACCCATGTTAACAACTCGTTTGAGTGCCAGTATTGTAATGCACAATACAAAACGGCATTCGGCCTAAAGCGACATTTGGTTCGTCATACCGGAGTACGTCACAGATGCAGCCTTTGCACAAATACGTACACCCGTCAGGATGCCCTAAAGAAACACTTAGAAATGCATCATAAGAGAAACAAATATGAATGTGAGGAATGTCGGACCAATTTCTACGCAGCCGACACACTCAAGCTACACCTTCAAAGCAAAGACAACAAATGTGGACTTGGATACAGTGATACTTCGCCTCACAAAAATCAAGATGAATTACCAGGAGAATCATTTGAGGTCTATGAACCATTGAACGATGACCAACAACTTGCAAGCAATCCCCAAAGTGGTACATACAGAGACATAAAACAAGAGGTTACTGTTCCAACGGAGGGTTCTTTGCTTGTAAAAATTGAGTCCTTGGAAGAATTTCACAATGATTCCGTGAAAGATGAACACGGATTGGCCTTCAGTTGTTTGCCAATAAAGCGTGAACATTCACTTGAAGTTGTCGGAGACATGGAAAACCCAATCGATGAATCTAAGGTCATTTCGAGAGACCATTCTCCATGTGTAAAGAGTGCAGCAATGGAACCATCCCCTCAACTTGTAAATGAAGGAGAAGACGAGGATTCGGAGGAGGAATTAGATGAATCCCCTcattcttcaaacaaaaaagaagattcAGTTGAATTTCTTAATAACGCATTAGAAGATAATGAACCATCCTTCTCTTGCATCATCTGCAGCCGGAAATTCCAAATGTATCGTGACATCATAGATCACTACGTAGTTGACCACGACAAAGGCACTGCGACTTTCACGTGCCCCTTTTGCAATGAAGAACTGTCGAATAAGGGTATTTTACGGACTCACCTAAAGGCACACATAACTCCAGACTACAAATGCCAATTCTGTGACGGACAGTACAAAGCAGCATATTTGCTAAGGCGACACCTGCTAACACATACCGGTAAACGACCTTTTTCGTGTACACAATGCAGTAAAAGATTTAAAATCTGTAATGAAGACAAGTTGCCTCATAACATTTGCCATGAATGCCAGAAGGTTGTGGACGCAGCATTTTCATTTCGCATCCAAGCGCAGCGAATTGAAGATGTACTAAAGcggttcataaagaaagtataCGTTACCGCAGAGGAATCGTCAACTAACCATGAAACAATTTCGGACACCGTTGTGGGGTCTGGAAAAATCGATGAACCAATTGCTATACAAATCGACGGTTATGAAGTGTCGTTTGTGGGGGAAAAACCTGAAACTACTCCGTGCAATGTGGTGTCTTCAAACCAACCGGAGCCAGAAACTCACAACTTGAAACTTGAGCCACCAgatattagaaaaaaattgtttaagtgtGGAATTTGCTCGAAGGAGTATAGTTTTCGCAATGGTTTGCATAACCACCTCATGACTGCTCATGTACAAAAGAAGGAGTATCAGTGCCCGGTTTGCGGGAAAATGTTCAAGAAGAGGGATAGATTTCTCCAGCATAAGAAAAGATTTTGCGTTGCTCCAGATGCTGTACCTAAGGTAGCGAAAGAAGCATGTCAAATAACGATTTATCCCATTGGAGAGTGGATGACTGCAGATAATTTCCAAGTAGAGATCAGAAACTTCTCGTGTTCTTTGTGTGATGGGaaatTCGAGCTGGAAACTGACTTTACCTGTCACATGCAAGACCACTCAGCAATGAAAAGATGTCCTTActgcaaaaaaaactttaaccgTGCAATTAGCTTAGAGAGTCATATTCGGTCTCATACCAATGACAAACCTTTTGTATGCCCACTATGTTCAAAAGGATTTTGTGCCCCGCGAGCGTTTCGAAATCATCTCAAACTTCACACCGAGAGAAAAGCTTACGTGTGTGATACTTGTGGTAAAAGGTACATCTCCGAAAGGGAACTTGTTATGCATCTCAAAACTCATGAGAAGGAGCCAGTATCTGTTGATTTAGAGGAATACGAAGAAGcaatttcttttgttaaaagaatatcCAGTAATTCGAATAATCCAGAGACACCTGGCAATGTTGTGAACTCAAATACGATTAGAGCAATCGATTTGCCTAATACGTCCGGTTTAAACAATGAAACCATTGTTGAGTCTAAAGTGGAACCTGAAGTTTCAACTAAAAACGTTTCGCCAAACACTGCAGGTATCAATGACTTGGTATGTAAAATGGAACTAGACAGTGCAATGGATGATAAGTCATCTAACGAATCAGTTGttataaagaaagaaataatcgaGGTGTCAAGTGGTTCAGATAATGAAGAAGAAGTACTTATTCCTGATTGCAATATTTGGAATGCGCCACCAACTGGTTTTGAGATTATTGTAAAGGAAGAAAGTTTGAATGACGATCGTTCGAAGTTTGAGATTTTCAATGAACCGCTAAGTGACGATGAAAAGTCCTTCGACCAGTCCATCCACGACTCCACGCTGAGGCCCGACAATGAACCGCTGATGACAGTGAATGATGGCTTTGACATTAAAGTAagccaagaaaaaaaatttgaagtcGGCCACCCAACGTTGAAGATGGATGACCCGTTCCTTCTAGACCAGTTCGATCAGTCCAAGCAAGATCCTGCGGTCCAACCTTACACCAGTTTTACCTGTGCAATTGTAGAGTGCAAAATGGAATTTAAATACTATCGGGATATCATCAACCATTACACAACTCAGCATTGCCTAGGACCGCCTCCTTTCAAATGCCCCGTGTGTACGTTGGAGTTTCCATTGAAATTGGATGTGCGTAGTCATCTAAAATTGCATTTAACGTGTGAATACAAGTGTCCGTATTGTCCCAGAGCGTACTGGCAATTACGTGATTTGAAAATACACCTGCGGACTCATACCGGCGAACGACCATTTAAATGTACAATGTGCCCGAAGAGGTTTAAGCAGCGACCTGCTTTAAAAGTTCACATTAAGACGCATAACATTTGTAAGGAGTACAAGTGCAATATTTGTTCCAAAGAATTCTTTTCGTACAATGGTCTTTTCCTGCACAGTAAAAGCCACACAGATATCAAAGAGCTGCAGTGCAATTTTTGTAGTAAACAGTTTCCAACTAAGAGCCGCTTGCGAAGACATCTAAACGGAATTTGTCCCATTCGTACAGGGACGAAAAGTTGA
Protein Sequence
MNEKKTLTQPSCSRKVNAGEKNVDFSNTCRTCLRGITDDNFHLIDESINSIIEESAGVMVLKENQDKLPQQICNVCFKALHFAYAFRQECQKVDALLKSYAQEKEPHTSRSSSESDAEEQSEGINPLEDEDEPFGFGNESVEDKECSPGTKETKRWKFICRLCGSVWTNIKAIIHHYMSQHVNGNDPNQCPLCSYKLKQTNAPRLRNHILTHVNNSFECQYCNAQYKTAFGLKRHLVRHTGVRHRCSLCTNTYTRQDALKKHLEMHHKRNKYECEECRTNFYAADTLKLHLQSKDNKCGLGYSDTSPHKNQDELPGESFEVYEPLNDDQQLASNPQSGTYRDIKQEVTVPTEGSLLVKIESLEEFHNDSVKDEHGLAFSCLPIKREHSLEVVGDMENPIDESKVISRDHSPCVKSAAMEPSPQLVNEGEDEDSEEELDESPHSSNKKEDSVEFLNNALEDNEPSFSCIICSRKFQMYRDIIDHYVVDHDKGTATFTCPFCNEELSNKGILRTHLKAHITPDYKCQFCDGQYKAAYLLRRHLLTHTGKRPFSCTQCSKRFKICNEDKLPHNICHECQKVVDAAFSFRIQAQRIEDVLKRFIKKVYVTAEESSTNHETISDTVVGSGKIDEPIAIQIDGYEVSFVGEKPETTPCNVVSSNQPEPETHNLKLEPPDIRKKLFKCGICSKEYSFRNGLHNHLMTAHVQKKEYQCPVCGKMFKKRDRFLQHKKRFCVAPDAVPKVAKEACQITIYPIGEWMTADNFQVEIRNFSCSLCDGKFELETDFTCHMQDHSAMKRCPYCKKNFNRAISLESHIRSHTNDKPFVCPLCSKGFCAPRAFRNHLKLHTERKAYVCDTCGKRYISERELVMHLKTHEKEPVSVDLEEYEEAISFVKRISSNSNNPETPGNVVNSNTIRAIDLPNTSGLNNETIVESKVEPEVSTKNVSPNTAGINDLVCKMELDSAMDDKSSNESVVIKKEIIEVSSGSDNEEEVLIPDCNIWNAPPTGFEIIVKEESLNDDRSKFEIFNEPLSDDEKSFDQSIHDSTLRPDNEPLMTVNDGFDIKVSQEKKFEVGHPTLKMDDPFLLDQFDQSKQDPAVQPYTSFTCAIVECKMEFKYYRDIINHYTTQHCLGPPPFKCPVCTLEFPLKLDVRSHLKLHLTCEYKCPYCPRAYWQLRDLKIHLRTHTGERPFKCTMCPKRFKQRPALKVHIKTHNICKEYKCNICSKEFFSYNGLFLHSKSHTDIKELQCNFCSKQFPTKSRLRRHLNGICPIRTGTKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-