Xseg010943.1
Basic Information
- Insect
- Xylota segnis
- Gene Symbol
- -
- Assembly
- GCA_963583995.1
- Location
- OY757238.1:18611484-18614758[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.6e-05 0.0027 18.1 0.1 1 23 52 74 52 74 0.98 2 11 1.4e-06 0.0001 22.5 1.3 1 23 80 103 80 103 0.97 3 11 0.00013 0.0096 16.3 1.1 1 23 109 131 109 131 0.98 4 11 8.1e-07 6.2e-05 23.2 0.6 1 23 137 159 137 159 0.98 5 11 0.00043 0.032 14.7 1.3 2 23 166 187 165 187 0.97 6 11 0.00069 0.052 14.0 0.7 1 23 193 216 193 216 0.97 7 11 0.17 13 6.5 1.8 1 23 222 242 222 242 0.93 8 11 0.0004 0.031 14.8 3.8 1 23 248 270 248 270 0.98 9 11 0.00011 0.0087 16.5 1.9 1 23 276 298 276 298 0.99 10 11 0.0014 0.11 13.0 2.6 1 23 304 330 304 330 0.93 11 11 7.6e-05 0.0057 17.0 2.8 1 22 336 357 336 357 0.97
Sequence Information
- Coding Sequence
- ATGAGAACACGCGGTTTGAAACGATCTGTTTCTAAAGACGACGCAAGTAGTTCCATACGGGACAGCGGAATATCAATATCTGAAGATTTCTCTGGAAGTGAGGAGGGCAGTAGCAAAGAcgtagaaaagaagaaaaagaaaaggcctAAAAATTACAAATGCGCCGTCTGTGGCAAGACATTTCAAGGTGGGGTGGACTTACGTCGTCATCTTCTCATCCATGCCGATGAGAAACCTTACATCTGTCACATATGTAACAAAGCCTACAGGCAGGAATCCAATATGAAAATTCATATTAAAGTAACACATACCAATCAGAAAGAATTCGTCTGCCGCTTCTGTAACAAGCCGTTTCCACTTAAAGAACGTTTAAAAATGCACATGCGCTTGCACACTGGAGAGAAACCCTATATTTGTCCACACTGCCCAAAGACGTTTGCTCGAGGTGGACAGCTTCAACAGCATTTAACTACCCATGatgacaaaccaaaaaaaacttgCCTAGTATGCTCTTCTACTTTTTCTAGTGAAAGAAATCTAAAACTCCATATGGAACGTCATGAGGAAGAACAGAATCATACGTGTAAAATGTGCCAGAATGTGTTTACAACTGTTAAAGCTTTGGAAGAACACGTTATAACAGACCATGTAACTGCGCGGGAATTTGAATGTCCGATTTGTGAGAAGATTATAACAGGAAAGCTCGAGACGCATATGAAAACTCATGAAACCGTTAAAACACATAAATGCGAAGTATGCAAGTCCGTTTTTGCACAAAGAACACAGTATAAGATTCATAAGAGGACACACACTGGGGAACGGCCGTACCAGTGCAGGATTTGCTGGCAAAACTTTGCACATACCAGTGTTCTTAAATTACACATCAGGAAACACACTGGGGAGAAGCCTTTCAAATGCTTGCTGTGCCAACGTTCGGACACAGCTTTCTCTCAGCTGTCTCACTTAAAAACTCATATGAAATCGATTCATAAGAAAGACAAAGCGTACGTTTGCCACGGATGCAAAGAATGCTTCAAGGTTAAGTACAGTCTAGATGATCATATGAAAACGTGCGAACAAATATCGCCAGAAATTAAGTTCGAGCCGATCGAAGCTGATGAGGCTGACAAAAATGCTGCATTACTCTCGCGTTTAAGGTACCTTTTCGCagtgcttttgaaaaaaatatccacaGAGGAGAAACTCAAAAAACTTGGCTTTGAGAAACGACTTATTGACAATGTTCTCATTGCATCGCTAAAACTAGCAAATCGAAACTGTTATGACAATACTAAAATGAATGAGCTCGACcggatgaaattaaatatacAGGAATTTTTAACGTGGATTGTTCCAGCTGAGGTAATGGATGGATTTAAAAAAGAGTGTCCATCTATAGAGAGTATTTTGGACAAGATTGTTACAATGTATTTGAAACAggtagagtaa
- Protein Sequence
- MRTRGLKRSVSKDDASSSIRDSGISISEDFSGSEEGSSKDVEKKKKKRPKNYKCAVCGKTFQGGVDLRRHLLIHADEKPYICHICNKAYRQESNMKIHIKVTHTNQKEFVCRFCNKPFPLKERLKMHMRLHTGEKPYICPHCPKTFARGGQLQQHLTTHDDKPKKTCLVCSSTFSSERNLKLHMERHEEEQNHTCKMCQNVFTTVKALEEHVITDHVTAREFECPICEKIITGKLETHMKTHETVKTHKCEVCKSVFAQRTQYKIHKRTHTGERPYQCRICWQNFAHTSVLKLHIRKHTGEKPFKCLLCQRSDTAFSQLSHLKTHMKSIHKKDKAYVCHGCKECFKVKYSLDDHMKTCEQISPEIKFEPIEADEADKNAALLSRLRYLFAVLLKKISTEEKLKKLGFEKRLIDNVLIASLKLANRNCYDNTKMNELDRMKLNIQEFLTWIVPAEVMDGFKKECPSIESILDKIVTMYLKQVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -