Xseg006825.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylota segnis
Gene Symbol
-
Assembly
GCA_963583995.1
Location
OY757237.1:48817465-48819399[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 6e-05 0.0046 17.4 1.0 2 23 165 186 164 186 0.97
2 10 0.00015 0.012 16.1 5.9 1 23 192 214 192 214 0.98
3 10 1.5e-05 0.0012 19.2 4.6 3 23 228 248 226 248 0.94
4 10 0.0018 0.14 12.7 3.0 2 21 255 274 254 276 0.94
5 10 1e-06 7.5e-05 23.0 6.0 1 23 282 304 282 304 0.99
6 10 6.8e-07 5.1e-05 23.5 0.9 1 23 310 332 310 332 0.99
7 10 2.1e-05 0.0016 18.8 0.1 3 23 340 360 339 360 0.99
8 10 0.00011 0.0085 16.5 0.3 1 23 366 390 366 390 0.97
9 10 9.2e-07 7e-05 23.1 4.1 1 23 396 418 396 418 0.99
10 10 0.00055 0.041 14.3 4.9 1 23 424 446 424 447 0.95

Sequence Information

Coding Sequence
ATGCAACACTGCCAAGGGACatatgaaattaataaaatctGTCGGTGCTGCCTAAAAACCATTGGTGATATGAAGCCACTTTATGGGTTTTCTTTAGATGAAATGCTGCGTTCGGTCGCGGGTATTCAGGTTCAGCCAAATGATGGTTTCCCCGAGCTACTATGCTTTCAGTGTGTACTGCAGTTGAGTCGAGCGTTTCGTTTCAGGGAGCAATGCCGGAAATCCAACTCGATAATCCAAGAATACATTAAAAACTCTGAAAACGCAACAAATGAAACTTGTAGGACTGTTGCTTCTAGCTTGGATCTCAACAGTCAGCAATTATTCAAAACGTCTGTGGGAGTAGACCATGAAAATGATAATAATGATGAGCATGACCATGATAGCAGTTCTGTTGTTCCAGACAATGAGGAGTTTGATACACCGATGAGACTGACAGAGACTGACTTCCTTCAGGAGTCTCCAGATGACGCTCGCAAACTAATTGATTTGACTTGTAAGGCTTGCAACAAACAATTTGTGGGTAGAAAACAATTGGTACGGCACATAAAAACACACGATAACAACAAGCCCTATAAATGCTCTGCCTGTGATAAAACGTTTGCCGAAAGCTGCAACCTAAAGAAGCACTTACATAAACACACCGGTGAGCTGAGAAACTCTACAAGTAAACCTCATCTCTGTTCAATATGTGgGAAGAGCTTCAAATATTCCAGTTCCCTATCCAAGCATAAGAAGTTCCACACCGGCAAAAATTTATTGCATTGCCCGCATTGTCCAAAGTACTACGTGGAAAACTCCGCTCTCAAGATACATATAAGATGTCATACAGGAGACAGCCCTTATGTCTGTCATCAATGTGATCGACGATTCACACAGGCGTGTAATCTACAAAAACATTTGCGATCCCATAGCGGAGAGCGACCCTTCAAATGTTCCATCTGCGAACGAACATTTGTAGAACGCGATTACCTAACAATACACATGCAGACACATAACTCAGAAAAACGAGCTCTCTGTAGTGTGTGCGGCATACGGTTTGCTAACGCTAAGACCTTAGACGCTCACATGCGAATACATAGTGAAAAACGATCGTACGTCTGCGGAATGGAAAATTGCAATAAGACGTTTACCCGACTAGATACAGTCTTGGTTCACCGCAGGATACATTCAGGAGAAAAACCTTACTCGTGCAACGTATGCAGTCATTCATTTACCACTTCAACACAACTTTCAAACCATATGCGAACGCATACTGGTGAAAAACCATTTACATGTGGTTTTTGCTCGAAGAAATTCGCCAGCAAGAACAGTTTAACGtcACATTCAAACAAGCACCACAAAGATCTCAATCACCAAGATTTGAAAAATTCGATCATCGAGCAAGTTTCGTTACAAGAAGTCTCAAATCTTAATGAAGACGCGGTTACGGAACAAATGTTGGAAGAATCAGTGCTACTGTTCAAAATAAATGAGAACGGTGAATTGGTTCCAGACCCAGAATGTACTTCTATTGCGAAAATTGCAACTATTTAA
Protein Sequence
MQHCQGTYEINKICRCCLKTIGDMKPLYGFSLDEMLRSVAGIQVQPNDGFPELLCFQCVLQLSRAFRFREQCRKSNSIIQEYIKNSENATNETCRTVASSLDLNSQQLFKTSVGVDHENDNNDEHDHDSSSVVPDNEEFDTPMRLTETDFLQESPDDARKLIDLTCKACNKQFVGRKQLVRHIKTHDNNKPYKCSACDKTFAESCNLKKHLHKHTGELRNSTSKPHLCSICGKSFKYSSSLSKHKKFHTGKNLLHCPHCPKYYVENSALKIHIRCHTGDSPYVCHQCDRRFTQACNLQKHLRSHSGERPFKCSICERTFVERDYLTIHMQTHNSEKRALCSVCGIRFANAKTLDAHMRIHSEKRSYVCGMENCNKTFTRLDTVLVHRRIHSGEKPYSCNVCSHSFTTSTQLSNHMRTHTGEKPFTCGFCSKKFASKNSLTSHSNKHHKDLNHQDLKNSIIEQVSLQEVSNLNEDAVTEQMLEESVLLFKINENGELVPDPECTSIAKIATI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01542386;
90% Identity
-
80% Identity
-