Xseg008737.1
Basic Information
- Insect
- Xylota segnis
- Gene Symbol
- -
- Assembly
- GCA_963583995.1
- Location
- OY757237.1:99890341-99895914[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5.8 4.4e+02 1.7 0.1 2 19 174 191 173 196 0.85 2 20 2.2 1.7e+02 3.0 0.1 1 20 203 224 203 228 0.73 3 20 0.046 3.5 8.3 4.9 2 23 239 261 238 261 0.91 4 20 0.42 32 5.2 2.7 2 23 270 291 269 291 0.88 5 20 0.03 2.2 8.9 0.1 3 23 300 321 299 321 0.95 6 20 0.0012 0.09 13.3 3.0 2 23 328 349 327 349 0.96 7 20 0.0014 0.1 13.1 1.7 3 23 357 377 355 378 0.95 8 20 2.5e-05 0.0019 18.6 2.1 2 23 385 407 384 407 0.96 9 20 0.098 7.4 7.3 0.0 2 20 417 435 416 437 0.91 10 20 0.00048 0.036 14.5 1.1 1 23 453 475 453 475 0.97 11 20 0.0068 0.51 10.9 0.7 1 23 480 502 480 502 0.99 12 20 0.0012 0.088 13.3 0.3 1 23 518 542 518 542 0.96 13 20 8e-06 0.00061 20.1 1.9 1 23 548 570 548 570 0.98 14 20 0.031 2.3 8.8 1.2 1 23 576 599 576 599 0.96 15 20 0.0014 0.11 13.1 0.2 2 23 605 627 604 627 0.96 16 20 1.1e-06 8e-05 22.9 0.9 2 23 631 653 630 653 0.97 17 20 0.00012 0.0092 16.4 1.5 1 23 659 682 659 682 0.95 18 20 0.22 16 6.2 3.0 1 19 688 706 688 710 0.92 19 20 0.0013 0.1 13.1 6.0 1 23 716 738 716 738 0.98 20 20 0.0021 0.16 12.5 0.5 1 23 744 769 744 769 0.93
Sequence Information
- Coding Sequence
- ATGGATTTGGAATGTTTACGTTGTAGCACTAGTTTAAGCGATGATTATCAGTTAATCTTTGATGAAACTGGCATCGAATTGCAACTGGACATACTTTTGGCAGAGTACTTTGAAATTTTCGTCGAGCAAGATTCCAACTTAACGCAGGCTCTATGTCCAAAGTGTGTCAACGAACTTATTGAATTGTTTGATTTAACACAGAAAAATCAAGAGATACAACCGCCGCGGAAAGAAGAATCATTGAATGAAGAGGAAACAGAAGTACAAATCAAAGAAGAAGATGAACTTATTATTGAGCCTCCAGAACGGGAAGGAAGGGTCGAAATCGATGAAGATTCAAACTCAGTTAGTCTTAAAGATGGATTCTGTGGATTTAAGGAATCTGAAGGTTCTCAGGATTCCTTGAACAGCTTTGAAAATGTCCAGTATTTGGAGGAGTTCGAAAGTATAACTCCGCATAAATATATCCGTGAAGTCATAAAAAGTGAGCTGCAAGAAGTCACATATAAGCAAAATACTGTTTGCAGGCTATGTGGCGAGGTTTTGAAGAGTCACACCGCAGTTCTTATGCATGCGTGGACTAATCATGAATCCAGTTTGAAAACGTATCCCTGTTTAATTTGCGATAAAGTGAAAGGTTTCGACTCAATTAAGGACCTGGCCTATCACGTTGTCCTGAAACACTATAACCTTGAAAACGTCAACATTTATTGTACATGTCCCGAATGCGAAAAAAGGTTTGCAAGTTTCATTGAGTATAATAAGCATTCCTGCTACTCGCATAAAGCCATCGACCGTTTGCGACAGGAGTGTCTGAAGTGCTCGAAAGTGTTTACCTCGAATAagagGTATCGTTTTCATTTGCAATTCCATTTGGAAAAACGACGACCAAAAGCGTGCTTCATCTGtgatattttgttttcagaTGAAAATGATTTCTTTGAGCACATAATGTACGCTCACGAGAAGAAAACTGACTTGATTTGTAAAAAATGCGATCGAGTTTGTACTTCAAAGAAATCGTATGATATTCACATGAAACTGCACAGTGCTGTACGAATGTATGGCTGTAATTATTGTCCCAAGACgtatatgtacaaacaaatgCTGATAAATCATACAATAAGGCATCATTCggaaaaacaagtaaacaaaTGCACAATCTGTAACAAATCTCTAGCGAGTAAGCATCTCTTAACAAGGCATATGCAACTGATACATCTCAAAGAAACAGAGGAAACCGTATGCGTTTGCTCTATATGTGGGCTCGTGGGGGCAACTGAGAAGGATTTAAGAGACCACGCAGATACCGTCTGTCCAAATGGGGAACTGACTAGCGAACTTTTGAAAATCGCCTACGCTTGTGAATTTTGTGAACTTGCTTACAACAGTAAGAAGAGCTTGAAAACGCATCGCAAAATTCATGTGGATGAGCAATACAAATGCTGGATATGTCAGAGTCCTTATTCGGaatataaaaaattgaaaactcaCGTCATCACACACAAAAAGTACGATCCAATACAGAAAACGTTCCCGATCAACAGGCACTACGTTTGCGAttttgatTCGTGCGACCGGTCTTATGTAACATGGCCATCATTACGAGCACATAAAACACGACATGTTATCCATGCCAAGTTTACTTGTGAAGTTTGCAATCAAGCATTTAGATCACATTCTCAATTAAACAGTCACTTGAAGGCCCATGAAAATAACGAAGAATATCCTTGTCAATTCTGCTCCAAACTCTGTCCCTCCCAAATGTCGCTTTCAGTTCATATAGCGCGAAAGCATAACAATAATTGTAAATCATGTCCAACCTGTAAAGCAACCTATAATACCGAAGAAGCACTCAAAGAGCACATCGACACCAACCACGTCGAACTGAAATGTGAATTTTGCGGTAAAGTAACAAAGAATAAGCGAAATCTTAAAATACACATACGAATGATTCACATCAAAGTGAAAAGGTTCCATTGCTCCACATGCAACAAGGGATACTACAATTCTAGTGATCTCAAAGTACACGAGAGAGCAGCTCACGTTGAACCAAAGAAGTATAAGTGCACACAGTGTGACTTCAGCTCAAGCTATGAAGCGTCATTTAATGCCCACTGTCTGTTGCACGAGTCGAAAAAGCCCTTCAAATGTGAGGTATGCTCAAGACAGTTCACCAGAAAAACGTGTTTCAAACTACACCTGCTGAGACATTCTGATGTTAAACCGTTTATTTGTCCAGTGTTAGACTGTGGTAGATGTTTTGTAACCCAAGGGATCCTAAATTCACATTTCCGTGATAATCATTTAGAGCGCCAAACCACGATTGAAGAAGTTCCGCCACAACCACCCCCGgaagaacaaaaacaattatCATCGTCAGAGTATGTTGTCGTAGAAGTAATGAATGATGAAGCACTTAGTTTTGAAGAAGCAAATACTGAAGAGGAGATTTATCTGAAATACACAGATGATGAGCTAAGTGTAGATATTGAGAAatctgaatatacatatacatcaAATGCATCAGTAAGAAATTGTGCCGTCCTAGAAAGAACAGATCTTCATTAG
- Protein Sequence
- MDLECLRCSTSLSDDYQLIFDETGIELQLDILLAEYFEIFVEQDSNLTQALCPKCVNELIELFDLTQKNQEIQPPRKEESLNEEETEVQIKEEDELIIEPPEREGRVEIDEDSNSVSLKDGFCGFKESEGSQDSLNSFENVQYLEEFESITPHKYIREVIKSELQEVTYKQNTVCRLCGEVLKSHTAVLMHAWTNHESSLKTYPCLICDKVKGFDSIKDLAYHVVLKHYNLENVNIYCTCPECEKRFASFIEYNKHSCYSHKAIDRLRQECLKCSKVFTSNKRYRFHLQFHLEKRRPKACFICDILFSDENDFFEHIMYAHEKKTDLICKKCDRVCTSKKSYDIHMKLHSAVRMYGCNYCPKTYMYKQMLINHTIRHHSEKQVNKCTICNKSLASKHLLTRHMQLIHLKETEETVCVCSICGLVGATEKDLRDHADTVCPNGELTSELLKIAYACEFCELAYNSKKSLKTHRKIHVDEQYKCWICQSPYSEYKKLKTHVITHKKYDPIQKTFPINRHYVCDFDSCDRSYVTWPSLRAHKTRHVIHAKFTCEVCNQAFRSHSQLNSHLKAHENNEEYPCQFCSKLCPSQMSLSVHIARKHNNNCKSCPTCKATYNTEEALKEHIDTNHVELKCEFCGKVTKNKRNLKIHIRMIHIKVKRFHCSTCNKGYYNSSDLKVHERAAHVEPKKYKCTQCDFSSSYEASFNAHCLLHESKKPFKCEVCSRQFTRKTCFKLHLLRHSDVKPFICPVLDCGRCFVTQGILNSHFRDNHLERQTTIEEVPPQPPPEEQKQLSSSEYVVVEVMNDEALSFEEANTEEEIYLKYTDDELSVDIEKSEYTYTSNASVRNCAVLERTDLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -