Basic Information

Insect: Xylota segnis
Gene Symbol: -
Assembly: GCA_963583995.1
Location: OY757236.1:124119845-124122973[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5.4e-05 0.0041 17.5 5.2 2 23 222 244 221 244 0.96

2 12 6.3 4.8e+02 1.6 3.7 2 12 250 260 249 274 0.65

3 12 6e-05 0.0046 17.4 4.7 1 23 278 300 278 300 0.99

4 12 1.6e-06 0.00012 22.3 0.7 3 23 308 328 306 328 0.98

5 12 6e-08 4.5e-06 26.8 0.6 1 23 334 356 334 356 0.98

6 12 2.3e-06 0.00018 21.8 1.4 1 23 362 384 362 384 0.98

7 12 2.3e-05 0.0017 18.7 3.4 1 23 390 413 390 413 0.97

8 12 4.2e-05 0.0031 17.9 1.0 1 23 425 447 425 447 0.99

9 12 0.0038 0.28 11.7 0.5 1 23 454 477 454 477 0.88

10 12 2.1e-05 0.0016 18.8 0.8 1 23 483 505 483 505 0.94

11 12 0.00072 0.054 14.0 2.5 1 23 511 533 511 533 0.96

12 12 4.3e-05 0.0033 17.8 0.5 1 23 539 561 539 561 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5.4e-05	0.0041	17.5	5.2	2	23	222	244	221	244	0.96
2	12	6.3	4.8e+02	1.6	3.7	2	12	250	260	249	274	0.65
3	12	6e-05	0.0046	17.4	4.7	1	23	278	300	278	300	0.99
4	12	1.6e-06	0.00012	22.3	0.7	3	23	308	328	306	328	0.98
5	12	6e-08	4.5e-06	26.8	0.6	1	23	334	356	334	356	0.98
6	12	2.3e-06	0.00018	21.8	1.4	1	23	362	384	362	384	0.98
7	12	2.3e-05	0.0017	18.7	3.4	1	23	390	413	390	413	0.97
8	12	4.2e-05	0.0031	17.9	1.0	1	23	425	447	425	447	0.99
9	12	0.0038	0.28	11.7	0.5	1	23	454	477	454	477	0.88
10	12	2.1e-05	0.0016	18.8	0.8	1	23	483	505	483	505	0.94
11	12	0.00072	0.054	14.0	2.5	1	23	511	533	511	533	0.96
12	12	4.3e-05	0.0033	17.8	0.5	1	23	539	561	539	561	0.98

Sequence Information

Coding Sequence: ATGTCGCATACCATTTGCTTGGAAGAAATCTCTTTTTTAGAGAAAACCTGCCGAGCTTGCAGCCGATATGACCCCAATGATTCCATTACGTTTTTCCCGATTTTCAATGGTGATGAACCCAGTGTCGAGCTTGCACACgtttttaaagaattcattATCTGGAATGTAGAGataaAACCCAACGACGGCTTACCGCAACAAATGTGCAATGATTGCTTGGAAAAATTTGTGGAAGTTAAAATTTTTCACGATCAAGTTCTGGACTCACAACGCTTGCTGACCTCATACCTCAAAGGGGGTACCAACAATGCTGGTAGTGCAACAATAACAATAGAAACACTACCAATGTCATCGGATGGTGACCGCGTGGGATACATTTCACCAAGCAAACTGATTGAATATGTTGGCTCCGACGAAGAGGATGAAGAGAACACTACACTGACCAAGAGTGTAATGCATGAGTTTGATTATTTTGAGGAGAACGAAAGTGATTATCTTTTCAATCATCCGAATCAAATTGAAACAAGTGATCTGTTGGATTTCAAGGCTGATAATCCGGAACCAATTGAATTTATAGCAAGTTGCAATAAAAATTTCGAGGAAACATCTGTGGATAAGGAGGTGACGGCGGTGGAAGAGCCAGAATCTGATAATGGCAACACAAAATGTGATATATGCTTGAAAAGCTTTCGGACGGCACACCATTTACTGCGGCACAAACGCATATTTCACATTCGCAAGGACTTGACTTGTCCGATTTGTGGTAGCAAGTTTGAGAACATCACTCAGAGGAGCTTTGACTATCACCTGAGATCTCATCATGCCAAGAGATTCAAGTGCTCGTACTGTGAGAAAAGATTTCAGCAAAAGGTTCATATGATCAATCATGAGAGGACCCATACTAAGGAGAAACCTTTTGGTTGTGACATCTGTGGGAAGAAGTTCCGCCAAAAGGCCAGCCTGCAAGAGCACTTGTTCACCCACAAGGATCCTCATCCATTTAAATGCGAAATCTGTGGAAAAGGTTTCACACAGCGTTCAGGTCTTCGCATGCACTTGCGCCTACACACCGATACCAAACAATATCAATGTGAAGTATGCGGTCAACGATTTAATCAAAAAGCCCACCTAGAACTCCACACAATGAATCACACCGGCGAAAAGCCATTCCAATGTGAGTTTTGCTCAAAATCTTTTCGCCAAGCCTACCAACTGGGAAACCACATGCACTCGACACATTTCGACAATTCCGACAGTATTCGCAAGAGTGACTACCAGTGTTCGCAATGCGATCGAGAATTCACCAGCGTAATGGATCTCATTCAACATAAGAAATCCCATGACAATGGTGAGCGTAAGTTCCTTTGCAAGACATGCGGTGCCGGTTTTAAGAAGGAGACCCACTTAAATCTCCATGTGGATGCGGTGCACCTCAAGAAAAAACCCTTCAACTGCATCTATTGCAATAAGACCTTTGCACAGATGTCCAACTTGAATGTGCATTTGAAGATCCATCAAGGTTCCAAGCAACACAAATGTAGTTTCTGTGATAAATCATTCACCCTAAGAAAGACTTTACTAATGCACGAGGCGATTCACACTGGTGAGAAGCGTTTCAAGTGCAATTTCTGTGATGAATCGTTTGTGTATCGGCAGTCGCTTGGAGCCCACATAATGAACCATTTCCGTGATGAAAACGAGGAGGAATACACCATCAATGAAGAAGTCCTTGGCGATGAAGATTTCCTAGCGTACGACAATGATTTGGATCTCAATGACGAGTTTCAGCTCGACACATACAAACTACTGATGGAAGAGAattga
Protein Sequence: MSHTICLEEISFLEKTCRACSRYDPNDSITFFPIFNGDEPSVELAHVFKEFIIWNVEIKPNDGLPQQMCNDCLEKFVEVKIFHDQVLDSQRLLTSYLKGGTNNAGSATITIETLPMSSDGDRVGYISPSKLIEYVGSDEEDEENTTLTKSVMHEFDYFEENESDYLFNHPNQIETSDLLDFKADNPEPIEFIASCNKNFEETSVDKEVTAVEEPESDNGNTKCDICLKSFRTAHHLLRHKRIFHIRKDLTCPICGSKFENITQRSFDYHLRSHHAKRFKCSYCEKRFQQKVHMINHERTHTKEKPFGCDICGKKFRQKASLQEHLFTHKDPHPFKCEICGKGFTQRSGLRMHLRLHTDTKQYQCEVCGQRFNQKAHLELHTMNHTGEKPFQCEFCSKSFRQAYQLGNHMHSTHFDNSDSIRKSDYQCSQCDREFTSVMDLIQHKKSHDNGERKFLCKTCGAGFKKETHLNLHVDAVHLKKKPFNCIYCNKTFAQMSNLNVHLKIHQGSKQHKCSFCDKSFTLRKTLLMHEAIHTGEKRFKCNFCDESFVYRQSLGAHIMNHFRDENEEEYTINEEVLGDEDFLAYDNDLDLNDEFQLDTYKLLMEEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01542389;
90% Identity: iTF_01542389;
80% Identity: -